Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0027 ATGTCTCCACAAAGTTGTGTAGCTCGATCTCTTTCAATTTTCATCACCATCTTTGTCTTCTTTGGTTTGTGTTTTGGCTCTATCCTAGAAGACACACATGATCTAACTAATTATCAACATTACTCTATGATGAAGAAACCAAATAATAAACATTTTGGTATCTTCATGACAAAAAGGGTTTATGGATCTACCACCCCATCCACATCTCCAACGTCTCAAAGAAGGATCTATAATGTTGAAGACTTTGGAGCCAAAGCTAACATCGGAAGAGATGCAACTGAGGCATTTTTGAAAGCATGGGATGAGGCATGTTCTACAGGGGGTGTTCTTGTAGTCCCTGAAGAAAAAATCTATCACTTGAAGCCAATAACTTTCTCAGGACCATGCCAACCCAACACTGCCTTCAGGGTATATGGAACAATCAAAGCATGGCCCAAAATCTCAGCATACCTAAAAGATAGACTACACTGGATTAAGTTTGAGAATGTCACGAATCTCGGAGTTGATGGTGGTGGCACTTTCAATGGCAATGGAAGAAAATGGTGGGAGAACTCTTGCAAAAGGAATGAAAACCTTGCTGTGACTTTCTATCAATGCAACAACTTGGGAGTGAAAAACCTGAGGTTCAAAAATGCACAGCAAATGCACATAAGGTTTCAGCAATGCAACAATGTCACAGCTTCGAATTTGATTGTGAGAGCACCAGGGAACAGCCCCAACACTGATGGAATTCACGTCACGGGGACACAGAATATTCTCATAAGCAATAGTATCATTGGGACAGGAGCTGGTAATTCAGAAGCTGAAGTCTCTGATGTGTTAGTGAACAGAGCCACCTTAACAGGAACGACTAACGGAGTTAGAATAAAGACTTGGCAGGGAGGCTCTGGCTACGCGAAAAACATAAAATTTGTGAACATATTAATGCGAAATGTGACGAATCCCATAATTGTAAATCAAAACTACTGTGACCAGGACAAGCCATGCGATGAGAAGGACTCAGCAGTGGAATTGAGAAACATTGTGTACCAAAACATCATAGGAACAAGTGCTTCAGAAGTGGCAATAAAATTTGATTGCAGCAAAACCGTTCCATGCAAAGGAATATACTTTAAAGATGTGATTTTAAAACCTGTAGAAGGTGGTGGTGGTAGTGACACCATTGCTTCATGTAAAAATGTTAGATATGTCAATCGTGGAAAGCTTCTTCCTGCATGCTGA 1221 0.4054 MSPQSCVARSLSIFITIFVFFGLCFGSILEDTHDLTNYQHYSMMKKPNNKHFGIFMTKRVYGSTTPSTSPTSQRRIYNVEDFGAKANIGRDATEAFLKAWDEACSTGGVLVVPEEKIYHLKPITFSGPCQPNTAFRVYGTIKAWPKISAYLKDRLHWIKFENVTNLGVDGGGTFNGNGRKWWENSCKRNENLAVTFYQCNNLGVKNLRFKNAQQMHIRFQQCNNVTASNLIVRAPGNSPNTDGIHVTGTQNILISNSIIGTGAGNSEAEVSDVLVNRATLTGTTNGVRIKTWQGGSGYAKNIKFVNILMRNVTNPIIVNQNYCDQDKPCDEKDSAVELRNIVYQNIIGTSASEVAIKFDCSKTVPCKGIYFKDVILKPVEGGGGSDTIASCKNVRYVNRGKLLPAC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0027 406 Gene3D - 60 402 IPR012334 -
Aed1g0027 406 SUPERFAMILY Pectin lyase-like 67 405 IPR011050 -
Aed1g0027 406 SMART pbh1 270 291 IPR006626 -
Aed1g0027 406 SMART pbh1 299 320 IPR006626 -
Aed1g0027 406 SMART pbh1 222 248 IPR006626 -
Aed1g0027 406 PANTHER POLYGALACTURONASE 262 406 - -
Aed1g0027 406 PANTHER POLYGALACTURONASE 18 262 - -
Aed1g0027 406 Pfam Glycosyl hydrolases family 28 110 262 IPR000743 GO:0004650|GO:0005975
Aed1g0027 406 PANTHER - 262 406 - -
Aed1g0027 406 PANTHER - 18 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0027 Aed-Chr1 784109 789473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0027 11 406 Glycoside Hydrolase AT3G07970 46.575 3.82e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0027 K01184 - gmx:100796446 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0121 5 917226 919525 Aed1g0027 1 784109 789473 PCT
Aed4g1502 4 19903990 19905545 Aed1g0027 1 784109 789473 PCT