Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0018 ATGGATGAATACCACTGTTCTGCGTATCCACACATCTCCGCCTCCGATATCGCATCAGAAACTCCGCTGCGCACCGACGCTAATCAATGCTTCAGCGTAGAGGTCGAGTACACAAACATGTATGTCCTGAGCGCCAGCGAATTCAAAACCTCCAGCGATGTCACAAGCCAGACGTTTTCGAACATCTCGAAGGACGAGATAATGCAAGAAGCGACGGTCGTGTCGTGGCTATGTGCCATGGGCGTGCCCAGCGACGCGCACAGGACGGTGGCCGCCAAGGTGCAGCAGTGCGCCCGTGGCATGGCGAGCGACAGGACCGCCGCGGCAGTCTTGTCCATGCGCGTGGAACTCACCGTCACTCGTGCCAGCGAGGACGAAGCGAGTGATTTTGAGTATGACTATTTTCAGAACGAAGATGATCTCGAAGAGGATGATGATGATGATCATGGATTGGTGCCCGCGGAAAGGTCACACTTTGAGAGGCTGGAGACGGTTGAGGAGAAGGAGAATAAAAAGTGTATGATTTGTCTCGAGGATTTTTCTATTGGTGTTCGCTTGCCTTGTTTGCATTTGTTTCATAAAAACTGCATTGGGGATTGGTTGCAGGTGGGGAATTGTTGTCCCTTGTGTCGGTTTCAGTTTCCTTCCTAG 651 0.5207 MDEYHCSAYPHISASDIASETPLRTDANQCFSVEVEYTNMYVLSASEFKTSSDVTSQTFSNISKDEIMQEATVVSWLCAMGVPSDAHRTVAAKVQQCARGMASDRTAAAVLSMRVELTVTRASEDEASDFEYDYFQNEDDLEEDDDDDHGLVPAERSHFERLETVEEKENKKCMICLEDFSIGVRLPCLHLFHKNCIGDWLQVGNCCPLCRFQFPS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0018 216 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Aed1g0018 216 SMART ring_2 173 210 IPR001841 -
Aed1g0018 216 SUPERFAMILY RING/U-box 172 214 - -
Aed1g0018 216 PANTHER F6A14.12 PROTEIN-RELATED 31 215 - -
Aed1g0018 216 Pfam Ring finger domain 172 211 IPR001841 -
Aed1g0018 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 216 IPR013083 -
Aed1g0018 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 31 215 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0018 141 216 C3H Transcription Factor Family AT5G01980 41.667 2.67e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0018 - K11982 pvu:PHAVU_005G024400g 203.371