Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1965 ATGCCCAAGGTTGATACTACCATCACTTTGGAAGATGAAAGTGGGCAACTATATGAAACCAAATATCTTGCTCAAAAGGGCGGTTTAAGTGCTGGATGGAGGGGGTTTTCCATAGCTCATAACTTACTTGAGATGGATGTTCTAATATTCCACTTGGTCCAACCTTCCCAGTTTAAGGTGTATATTATAAGATCTCAGGGATCTGATGAAGTGGATGGTGCTCTTGGCCTTCTTAAGTTAGATGATTACAGAAAACAAAGGGATGGAGTGAATGGTGCTCTTAATGCTACTCAAGGAAATGATCATAAGAATAGCGGAATGGTTGTTGGTGGTCAATCAGATTTGGACTCTGGAATTAGATTTTCAGAATCTGTTGTGAGTTTCAGGGAAGTGACTGGTGTGGAGAACTTCAGCATTGTGGTGAATAGTTTGGTTATTGATTCGGAGCTCTCCAAATACATTCAGAGCAAGTATTATGAGCTGTGTTGCAGCCAGAGGTCGTTTCTTCATGACCATCTTCTTGAGGGTCTTAACACTAAACTGGCGGCTGGAATAATTTCGGAGACCATTAATATTGCTGATGCCATTAAAGCCAGCAAGCTTACAACAACCTCTCCAGATAGTTGTCATATGGGACAAAACATTGAAAGCCTTTGA 657 0.411 MPKVDTTITLEDESGQLYETKYLAQKGGLSAGWRGFSIAHNLLEMDVLIFHLVQPSQFKVYIIRSQGSDEVDGALGLLKLDDYRKQRDGVNGALNATQGNDHKNSGMVVGGQSDLDSGIRFSESVVSFREVTGVENFSIVVNSLVIDSELSKYIQSKYYELCCSQRSFLHDHLLEGLNTKLAAGIISETINIADAIKASKLTTTSPDSCHMGQNIESL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1965 218 ProSiteProfiles B3 DNA-binding domain profile. 1 66 IPR003340 GO:0003677
Aed11g1965 218 SUPERFAMILY DNA-binding pseudobarrel domain 2 65 IPR015300 -
Aed11g1965 218 Gene3D - 1 67 IPR015300 -
Aed11g1965 218 CDD B3_DNA 2 64 IPR003340 GO:0003677
Aed11g1965 218 Pfam B3 DNA binding domain 6 65 IPR003340 GO:0003677
Aed11g1965 218 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 1 206 - -
Aed11g1965 218 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 206 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1965 Aed-Chr11 22316117 22317103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1965 1 64 B3 DNA Binding Superfamily AT3G19184 56.250 1.39e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed11g1965 B3 7.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1965 - - ccaj:109816480 315.079