Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1963 ATGGAGGAAGAGGAAGATGAAGTGGTTTGGTGTTCTTCTGATTCGGGCGACGATGAGGATGAGAATGCTATCGAAGAACGGAAATCGCAGAATGTGGATGCCCTGGTCAGGGGCAACCTCGTGGTGAAGAGACAATCGTTGCTACCACGACTTCTATCGGCTGTTTGTAGGAAACCCTTCAAACCTCCTTGCTCTAAATCTCATGCATCCGGTTACAATCAAGACCTCACTCGCAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTATTCCTAGATCTGCCTTTGACGACTTCAAATTCAACGTTGCTGTTGCTGATGTTGCCGAGTCTTTGCCTCCTGGGATTGATCCTCTGGTATTGTGGCACCCACTAGACTCCCAGGATGAGGTTGACCCTTCTAATGCTAATTTCACCACCATAACTGTTGACCCGTTGCTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCGCAGGCCTGTCTACCACACCAAATATACATGGATGCATTTTGGCAGATGACATGGGCCTTGTCAGCAATTGGGAAGCTGAAATCAAAAAGTGGGTTGGAGAAAGAGTCCGTCTTGTTGCTCTATGTGAAAGCACAAGAGTAGATGTTATCTCTGGGATTGACAATTTTACAAGTCCCCAAAGCAATTTACAGGTGCTCATTGTTTCATACGAGACATTCCGAATGCATTCATCAAAGTTTAGCTCTGGTGACGCATGTGACCTTCTCATATGTGATGAGGCTCACAGACTGAAAAATGATCAGACAAAAACAAACCGGGCATTGGCAGCTCTCCCCTGCAAACATAGAATTTTGTTGTCAGGAACTCCCTTGCAAAATGACTTAGAAGAATTCTTTGCAATGGTTAACTTTACTAATCCTGGAATATTGGGTGATATCGCACATTTTCGACGTTACTATGAGGCACCGATTATTTGTGGAAGAGAACCTGCTGCTACTACAGAAGAGAAGAAGCTCGGTGCTGAACGCTCTGCTGAATTAAGTGTTAATGTGAATCGGTTCATATTAAGAAGGACTAATGCATTGTTATCAAATCACTTGCCACCTAAGGTTAAGCGCGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCATGGACGGGAGGGCATGGAGCTTGGGTTGAGCTATCCGGGAAAATGCATGTCTTAGCAAGATTACTTGCTCATTTACGTCAAAGAACAGATGACCGCATTGTCCTTGTCTCAAACTACACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGAGAACGAAGGTATCCTCACTTGAGGCTTGACGGCTCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTTAATAATCCATCCAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGTGGAAATCGACTTGTCTTGTTCGATCCTGATTGGAATCCAGCAAATGACAAACAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAGGAGCAAACTGATAACCTTGTGGCACAGGGTAACTTGCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGAGAACATCAAGTCAGAGATTCATGAAAAGATACAATGCAGTAGGTGTCAAACATTTGATGGCCCTCAAAGCACTGATGCCCAATCAATGATCACAGATAGTGAATCTGATGAAGAATCCTCTGATATAGGTGGATTTGCAGAAGTTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGTCCATTGGAAGAAGATTTGGGAAGTTGGGGCCATCATTTTTTCCCAACTTCTGTACCAGATGCCATCCTTCAGGCTTCAGCCGGTGATGAGGTGACTTTTGTGTTCACAAACCAAGTTAACGGACGACTGGTACCCATTGAGTCCATCATCATGAGTCCCAAGCTACAGCAAAAGGAACCAAATAAGGAATTACTCAAGTCAAGGCAGAACGGTAAACAAAAGCCCACTCCTTTTTCTTTACATAACAGACTACCACTGCAGCCTGCTTCTGGTGTTGCTAGTATGTCATCATCTGCTTGGACGAAGAAAACAGTAAATTCTGTCGTGATTACTAGAAACATCTCCCCAAATGTAGCATTTAAGACTGAGTACTCTCTTGTAAGTAAAGTATTGCCACAGAAAAGATCATGTCCTGCGAGTATCAATGATGATAATTTTGAGTAA 2436 0.4343 MEEEEDEVVWCSSDSGDDEDENAIEERKSQNVDALVRGNLVVKRQSLLPRLLSAVCRKPFKPPCSKSHASGYNQDLTRRLSARKRFVPWGSSSPIPIPRSAFDDFKFNVAVADVAESLPPGIDPLVLWHPLDSQDEVDPSNANFTTITVDPLLVRYLRPHQREGVQFMFDCVAGLSTTPNIHGCILADDMGLVSNWEAEIKKWVGERVRLVALCESTRVDVISGIDNFTSPQSNLQVLIVSYETFRMHSSKFSSGDACDLLICDEAHRLKNDQTKTNRALAALPCKHRILLSGTPLQNDLEEFFAMVNFTNPGILGDIAHFRRYYEAPIICGREPAATTEEKKLGAERSAELSVNVNRFILRRTNALLSNHLPPKVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGSTSISKRQKLVNCFNNPSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQVYQRQMSKEGLQKVIQQEQTDNLVAQGNLLSTEDLRDLFTFHENIKSEIHEKIQCSRCQTFDGPQSTDAQSMITDSESDEESSDIGGFAEVAGCLQNLKRSEKQVGSPLEEDLGSWGHHFFPTSVPDAILQASAGDEVTFVFTNQVNGRLVPIESIIMSPKLQQKEPNKELLKSRQNGKQKPTPFSLHNRLPLQPASGVASMSSSAWTKKTVNSVVITRNISPNVAFKTEYSLVSKVLPQKRSCPASINDDNFE 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1963 811 Gene3D - 443 703 IPR027417 -
Aed11g1963 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 700 IPR027417 -
Aed11g1963 811 MobiDBLite consensus disorder prediction 1 25 - -
Aed11g1963 811 CDD DEXHc_RAD54 157 363 - -
Aed11g1963 811 Pfam SNF2-related domain 193 397 IPR000330 GO:0005524|GO:0140658
Aed11g1963 811 SMART ultradead3 153 321 IPR014001 -
Aed11g1963 811 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 33 732 - -
Aed11g1963 811 Pfam Helicase conserved C-terminal domain 457 561 IPR001650 -
Aed11g1963 811 Gene3D - 364 439 - -
Aed11g1963 811 MobiDBLite consensus disorder prediction 719 749 - -
Aed11g1963 811 Gene3D - 193 362 IPR038718 -
Aed11g1963 811 Gene3D - 131 192 IPR038718 -
Aed11g1963 811 PANTHER SNF2/RAD54 FAMILY MEMBER 33 732 - -
Aed11g1963 811 MobiDBLite consensus disorder prediction 1 21 - -
Aed11g1963 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 313 IPR014001 -
Aed11g1963 811 CDD SF2_C_SNF 449 557 - -
Aed11g1963 811 MobiDBLite consensus disorder prediction 621 641 - -
Aed11g1963 811 SMART helicmild6 482 566 IPR001650 -
Aed11g1963 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 621 IPR001650 -
Aed11g1963 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 363 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1963 Aed-Chr11 22304254 22313523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1963 446 561 RAD5 or RAD16-like Gene Family AT5G43530 35.043 3.16e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed11g1963 SNF2_N 2.2e-31 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1963 K10875 - gmx:100781631 1396.33