Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1962 ATGGTTATTGGGGCAGAGCAAAGGGTGGGCGGATCGGAAACTATCATAGCAAGTGGCCACGTGCACGGTCACGGTCACGGCGGTTATTTTTATTGGTATCATCCCTCTCCACCTCCCCCGAAGTGTCGCCCGCCTCCACCTCCCCCGAAGTGTCACCCACCTCCACCTCCACCTCCTCCTCCACCTCCACCTCCACCTTCGATACGGTTGCAGAGAGCTCGCAAAGCGCTTCTGAATTTCACTCTTTTTGTGAATGACCCGACTGGATATACGAGTAACTGGAGGAAGGGTAACGATCCTTGTAAGTTCAAGGGGGTGCGATGTGCCAAATATCCAGATGGACAGCAAGCAGTGGCGGGAATAGACCTGAATGGAGCCGGGCTCTCTGGTAAAAAAGACTGTAACGCGATGATCCCGCTCTCTGGCCTCTTGGACAGGATACCAGAGCTCACATTCTTCCACGTCAACTCAAACAACTTCAGCGGTGGCATCCCAAGAAACATCAGCGAGTACAAATTTTTCTTCGAGTTAGACCTCAGTAACAACAAACTGGAGGGCGAGTTTCCAAAAGAAGTGCTCAAGGCCAAGCCCCTGGAGCAACAGCTGGTGTTCCTGGACCTGAGGTTCAACCGTCTCGGCGGCCCAATTCCAGCGCAACTGTTTGAGTTGGATCTGGATGTGATTTTCATCAACAACAATAAATTCAGTGGCAAACTCCCGGATAACTTTGGGTCCACACCGGCCAGGTACCTCACTTTTGCCAACAACCAACTCACGGGTCCAATCCCTTCAAGCATTGGCAAAGCTTCCAAAACCCTGACAGAAGTGCTCTTCCTGGGCAACCACTTCGAGGGCTGCTTGCCCTACCAAATTGGGAACCTCGAAAAGGCCACCGTCTTTGATGTGAGCAAAAACTGGTTAACGGGTCCCATACCACACTCCTTTGGGTGCTTGGAAAGCATCCAGTACCTGAACTTGGAGCAGAACCAGTTTTACGGAGAAGTTCCGGAGATGGTGTGTCAGCTGCCGGGGCTCCGCAACAATGGGAATCTCTCCTTATCGGACAACTATTTCACTCAGGTTGGCCCTGCATGCAGGAGCCTCATCAAAAACAAAGTGTTGGACGTCAGCTACAATTGCATCCTCGGCCTACCAAATCAAAGGCCGCACGGACAATGTTCAGAATTCTTCTCCAAGCTCAAGCCCTGCCCAAATCCAAAGTATCTTCATTACGTCCCTTGTAAAGGATACTACCCGCATACCCACCCCGCTGCCGCCTCCATTACTACTCCTCCGATCACTTACAACTCTCTCAACCCTCATCATCTTCATCGCTAG 1338 0.5164 MVIGAEQRVGGSETIIASGHVHGHGHGGYFYWYHPSPPPPKCRPPPPPPKCHPPPPPPPPPPPPPPSIRLQRARKALLNFTLFVNDPTGYTSNWRKGNDPCKFKGVRCAKYPDGQQAVAGIDLNGAGLSGKKDCNAMIPLSGLLDRIPELTFFHVNSNNFSGGIPRNISEYKFFFELDLSNNKLEGEFPKEVLKAKPLEQQLVFLDLRFNRLGGPIPAQLFELDLDVIFINNNKFSGKLPDNFGSTPARYLTFANNQLTGPIPSSIGKASKTLTEVLFLGNHFEGCLPYQIGNLEKATVFDVSKNWLTGPIPHSFGCLESIQYLNLEQNQFYGEVPEMVCQLPGLRNNGNLSLSDNYFTQVGPACRSLIKNKVLDVSYNCILGLPNQRPHGQCSEFFSKLKPCPNPKYLHYVPCKGYYPHTHPAAASITTPPITYNSLNPHHLHR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1962 445 Pfam Leucine rich repeat N-terminal domain 73 108 IPR013210 -
Aed11g1962 445 Gene3D Ribonuclease Inhibitor 70 246 IPR032675 -
Aed11g1962 445 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 50 427 - -
Aed11g1962 445 Gene3D Ribonuclease Inhibitor 247 411 IPR032675 -
Aed11g1962 445 MobiDBLite consensus disorder prediction 41 67 - -
Aed11g1962 445 SUPERFAMILY Formin homology 2 domain (FH2 domain) 55 64 - -
Aed11g1962 445 PANTHER BNAC05G26270D PROTEIN 50 427 - -
Aed11g1962 445 SUPERFAMILY L domain-like 73 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1962 Aed-Chr11 22300317 22301654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1962 68 403 Trihelix Transcription Factor Family AT1G12040 41.298 2.09e-77 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1962 - - gmx:100781083 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1962 11 22300317 22301654 Aed11g1962 11 22300317 22301654 ECH