Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1932 ATGGCTATCCAAGAATCTCTGTTATACGACAGGCCTAGAAAATCCGTTTCGAAAACTATCTGTTTAATATTTTCTATAGTTGCTGTGATAAGCTCATCAGCCTTTCTGGGTTCATATCTCATAAAATCTTCCACCCAACATCTCTGTGATCATGCACTTGATAGGACAACGTGCTTAGCACATGTCTCCGAAGTGGTCTTGACCACCACAAAAGACCACAAATTCAACTTGCTACAGTCATTCCTAATGAAACACACCTCAGACATTGAGAGAGCAATGAAAACGGCCACTTCTATCAAACTTAGGATCAACAGTCCCAAAGAGGAAGCAGCTTTGCAGGATTGTGTGGAGCTGATGGACTTATCCATGAGCAGAGTTTGGGACTCAATGGTGACTCTAACAAAAGAAACCATTGAGTCTGAACAAGATGCACACACGTGGCTAAGTAGCTTAGAGGGGACAGGTCGTGCCCTGATGAAGGCTGAAGTGGAGGACTTGATGTCAAGAGCAAGAACATCTCTAGCCATGTTTGTTGCTGTTGCTGTCTTGCCTGATCCAAAGGTTGATGGAGGGAAGTTTCCCTCTTGGGTCAACAGCAGGGACCGGAGGCTCTTGGAGTCTACAGTTAGGGACATCAAGGCTAATGTTGTGGTAGCTAAAGATGGAAGTGGTAAGTTTAAGACTGTGGCTGAGGCTGTGGCATCTGCACCTGACAACGGTAAGACAAGGTACGTTATTTATGTTAAAAAAGGAACATATAAAGAGAATGTTGAAATTGGTAAGAAGAAGGCCAACGTCATGCTCCTCGGGGATGCGGCTGTGGGAGATGGATTTATAGGTCAAGACATATGGTTCCAAAACACAGCGGGCCCAGAGAAGCACCAAGCAGTGGCTCTTCGCGTAGGCGCCGACCAATCCGTCATAAAACCGGCTGCCGCATTGATGCCTTCCAAGACACTCTATGCCCACTCCAACAGGCAGTTCTACCGAGACTCCTTTATAACTGGCACCGTTGACTTCATATTTGGAAATGCAGCTGTTGTGTTCCAAAAGTGCAACCTGGTGGCACGAAAGCCCATGAGTAAACAGAACAACATGGTGACGGCCCAAGGACGAGAAGATCCAAACCAGAACACAGGAACTTCAATTCAACAATGTAACCTAACTCCGAGTTCGGATCTAAAGCCTGTGGTGGGTTCTTTCAAAACATATCTGGGCCGCCCATGGAAGAAGTACTCAAGAACGGTTGTGATGCAGTCAACATTGGAGAGTCACATTGACCCAACAGGATGGGCAGAGTGGGATGCACAGAGTAAAGATTTTTGCAAACGCTGTATTATGGTGACGGGCCATGGCGCTGGTACCAGCAAGAGAGTCAATTGGCCTGGTTACCATATCATCAAAACTGCCGCAGAGGCCACCAAGTTCACAGTAACAGAGCTCATCCAAGGCAATGTTTGGTTGAAGAACACCGGTGTCAACTTCATTGAAGGCCTCTAA 1500 0.4653 MAIQESLLYDRPRKSVSKTICLIFSIVAVISSSAFLGSYLIKSSTQHLCDHALDRTTCLAHVSEVVLTTTKDHKFNLLQSFLMKHTSDIERAMKTATSIKLRINSPKEEAALQDCVELMDLSMSRVWDSMVTLTKETIESEQDAHTWLSSLEGTGRALMKAEVEDLMSRARTSLAMFVAVAVLPDPKVDGGKFPSWVNSRDRRLLESTVRDIKANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEIGKKKANVMLLGDAAVGDGFIGQDIWFQNTAGPEKHQAVALRVGADQSVIKPAAALMPSKTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCNLVARKPMSKQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVVGSFKTYLGRPWKKYSRTVVMQSTLESHIDPTGWAEWDAQSKDFCKRCIMVTGHGAGTSKRVNWPGYHIIKTAAEATKFTVTELIQGNVWLKNTGVNFIEGL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1932 499 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 150 IPR035513 -
Aed11g1932 499 PANTHER PECTINESTERASE 19 271 - -
Aed11g1932 499 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 155 IPR035513 -
Aed11g1932 499 PANTHER PECTINESTERASE 272 497 - -
Aed11g1932 499 Pfam Pectinesterase 272 485 IPR000070 GO:0030599|GO:0042545
Aed11g1932 499 Pfam Plant invertase/pectin methylesterase inhibitor 45 150 IPR006501 GO:0004857
Aed11g1932 499 ProSitePatterns Pectinesterase signature 2. 334 343 IPR033131 -
Aed11g1932 499 SUPERFAMILY Pectin lyase-like 213 498 IPR011050 -
Aed11g1932 499 Gene3D - 209 499 IPR012334 -
Aed11g1932 499 PANTHER PECTINESTERASE 19 271 - -
Aed11g1932 499 PANTHER PECTINESTERASE 272 497 - -
Aed11g1932 499 ProSitePatterns Pectinesterase signature 1. 240 259 IPR018040 -
Aed11g1932 499 CDD PMEI-like_4 58 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1932 Aed-Chr11 22104203 22105907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1932 8 499 Carbohydrate Esterase AT1G11580 48.644 2.59e-172 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1932 K01051 - gmx:100815836 788.489