Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1907 ATGGAGCTTCAGACGCGTCCAGATCAGTGCCTCCCGGAGAGGAAAGGGCAGAAGAGGAAGCTCGAGGAGGATTTCGAAGAGGACCGACAGATCTCTGCTCCTCCCACCGGCGACGCTCGCGTCGCCCTCCTCTCCGACGTCAAGGAACAGGTTTCCGTCCTCGATTCCACTTTCTCATGGAAGGACTCCGATCGTGCTGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTTGCCAAAAACGAGGAAGTCGTGAACGTGATTGTTGAAGGAGGCGTCATTCCGGCGTTGGTTAAGCATCTTCAAGCGCCTCCTCTAGCTGAAAGCGATCGTATGCCGAGGCCAATGCCGTTTGAGCATGAGGTCGAGAAAGGAAGTGCTTTCGCGCTTGGACTTCTCGCCGTCAAGCCAGAGCATCAACAACTCATTGTTGACAGTGGTGCCTTAAAACATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCGATCACTAATCTTGCTCATGAGAACAGCAGCATTAAGACTCGTGTCAGGATGGAAGGCGGGATTCCACCGCTTGTTCATTTGCTGGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCATTGCGAACCCTTGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTGATTCTAATGCTTCGCTCGGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTCATTGGAAATCTGGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTACAACCTGTTATTGGACTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAAATGCTTCAGTCCCCTGATGTGCAGTTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGGGGTTTGATGCCATTACTGAAGCTTCTTGACTCCAAAAATGGCTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTTCAAAGACGAGTTGCATTGGCTCTTGCTCACCTTTGTTCTGCAGATGATCAGAGAAAAGTATTTATTGATCACCACGGTTTGGAGTTGCTTATAGGGCTTCTTGGCTCTTATAACCCCAAACAACAACTTGATGGAGCTGAGGCTTTATGCAAGTTGGCCAATAAAGCTATGGCTCTGTCTCCTGTAGATGCCGCACCCCCATCTCCAACACCCCAGGTCTATTTGGGAGAGCAATATGTAAACAATGCTACCTTGTCCGACGTTATGTTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATCTGCCTGCTTGCGTCCTCAGACGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGAAGCACGAGACATAGAGATTCCTAACATTAGATGGGAAATTTTTGAGCTGATGATGAGGTCAAATAAATTCTGCATTCATGTGCTTTATGAAAGTTGTGCTGTGAAAGCTTGTAATAATTTGTGGATAAAATCTTTCTCCAGATTTATATACACTGGATCAGTTGATGTTACTCTTGATATTGCCCAAGATCTCCTCCGAGCAGCGGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGCGAGTACACAATTGCACAGGATATATCACTGGAAAATGTGTCAAGTATGTATGAACTTTCAGAGGCCTTCAATGCTATATCATTGAGGCACACATGCATCCTTTTTATCTTGGAGCACTTTGATAAATTGAGTGGAAAGCCAGGACACTCTCATCTGATTCAGAGTATAATACCCGAGATCCAGAATTACTTTAATAAAGCCCTTACAAAGGCCAATTCCAACATCCAGCCGTAA 2205 0.4499 MELQTRPDQCLPERKGQKRKLEEDFEEDRQISAPPTGDARVALLSDVKEQVSVLDSTFSWKDSDRAAAKRATHALADLAKNEEVVNVIVEGGVIPALVKHLQAPPLAESDRMPRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQRKVFIDHHGLELLIGLLGSYNPKQQLDGAEALCKLANKAMALSPVDAAPPSPTPQVYLGEQYVNNATLSDVMFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEIFELMMRSNKFCIHVLYESCAVKACNNLWIKSFSRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHFDKLSGKPGHSHLIQSIIPEIQNYFNKALTKANSNIQP 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1907 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 148 IPR000225 GO:0005515
Aed11g1907 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Aed11g1907 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Aed11g1907 734 SUPERFAMILY ARM repeat 61 410 IPR016024 -
Aed11g1907 734 SUPERFAMILY POZ domain 532 664 IPR011333 -
Aed11g1907 734 Gene3D Potassium Channel Kv1.1; Chain A 521 697 IPR011333 -
Aed11g1907 734 SMART BTB_4 540 665 IPR000210 GO:0005515
Aed11g1907 734 MobiDBLite consensus disorder prediction 1 37 - -
Aed11g1907 734 SUPERFAMILY ARM repeat 438 509 IPR016024 -
Aed11g1907 734 Gene3D - 168 272 IPR011989 -
Aed11g1907 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Aed11g1907 734 MobiDBLite consensus disorder prediction 1 33 - -
Aed11g1907 734 Gene3D - 273 518 IPR011989 -
Aed11g1907 734 ProSiteProfiles BTB domain profile. 540 635 IPR000210 GO:0005515
Aed11g1907 734 Pfam BTB/POZ domain 533 596 IPR000210 GO:0005515
Aed11g1907 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Aed11g1907 734 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Aed11g1907 734 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 730 IPR044282 -
Aed11g1907 734 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Aed11g1907 734 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Aed11g1907 734 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Aed11g1907 734 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 730 - -
Aed11g1907 734 SMART arm_5 353 393 IPR000225 GO:0005515
Aed11g1907 734 SMART arm_5 312 352 IPR000225 GO:0005515
Aed11g1907 734 SMART arm_5 270 310 IPR000225 GO:0005515
Aed11g1907 734 SMART arm_5 136 184 IPR000225 GO:0005515
Aed11g1907 734 SMART arm_5 468 508 IPR000225 GO:0005515
Aed11g1907 734 SMART arm_5 228 268 IPR000225 GO:0005515
Aed11g1907 734 SMART arm_5 186 226 IPR000225 GO:0005515
Aed11g1907 734 SMART arm_5 81 135 IPR000225 GO:0005515
Aed11g1907 734 Gene3D - 47 167 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1907 Aed-Chr11 21941305 21948676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1907 199 522 U-box Gene Family AT3G46510 26.586 5.30e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed11g1907 BTB 6.3e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1907 - - gmx:100812456 1292.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1907 11 21941305 21948676 Aed1g2107 1 17674283 17682023 PCT