Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1903 ATGCTGGCGAATCATTTCCAAAACGGCATCGAAACGGCGAGGCTCGTTTGGTCGCGGATTCCTAATTCGGAAGAATCGCAGCTACTTGACGACGCCGTTGGCATCCTTAAGAAGAACGATGGAGGCGGTGTTGAGAGCCTTGACTATGAAGTCATTGAGAATTTTGCTTATCGTGAGGAGCAGGCGCAGAGAGGGAAGCTATATGTGAGCTATTTGCTGGTGGTGAAATGGTTCTTTGCCTTGCTCATTGGCATTTTTACAGGACTTGCTGCTGTTTTCATCAATATTGCTGTTGAAAATTTTGCTGGCTGGAAATTCTCGGTGACATTTGATATAATTCAGAAGTCATATATTGCTGGATTTGTTGTATATGTCCTGATCAACTTGGCTTTGGTGTTTTCCTCTGTATATATTATCACACAATTTGCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAATGGAGTTGATATTCATGGCATCCTTCTTTTCAGAACTTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTAGGTGGAGGCCTTGCTCTGGGTAAAGAAGGTCCTCTTGTCCATACTGGTGCTTGTATAGCTTCTTTGCTTGGACAAGGTGGATCTACGAAGTATCATCTAAATTCGAGATGGTTTCAAGTATTCAAAAGCGACCGGGATCGTCGTGATCTTGTAACCTGTGGATGTGCAGCTGGAGTTGCTGCAGCATTTAGAGCTCCGGTTGGTGGTGTATTGTTTGCTTTGGAAGAGGTTACATCTTGGTGGAGGAGTCAGCTCATGTGGCGTGTCTTCTTCACTTCTGCTGTTGTGGCTGTTGTGGTCCGAGCTGCAATGGGGTGGTGTAAAAGTGGAAAATGTGGACACTTTGGGTCTGGTGGATTCATAATATGGGATATATCAGAGTTAAGATCTAAGCTATTACCTTTTTCACTTGGTCAAGAGGATTATTCCTTTGCAGAGTTATTTCCAATGGCTGTTATTGGGGTTATTGGAGGCATACTAGGAGCCTTATTCAACCAGCTTACACTTTATATTACCACTTGGCGTAGAAATCATCTTCACAAGAAAGGGAACAGGGTCAAGATTATTGAAGCATGCCTTGTATCCATTTTAACATCAACCATTTCATTTGGCTTGCCACTTCTACGACAATGTAGTCCCTGCCCTGATTCTGATCCTGCTTCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTAAATTTTTTTTGTAGCAAAGACAAGGAATACAATGATCTTGCAACTATTTTCTTCAACACACAGGATGATGCCATAAGGAATTTGTTCAGTGCGAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTCTGGTTATGTTTTATGCATTAGCAGTGATCACATTTGGTACTGCTGTGCCAGCTGGTCAATTTGTTCCTGGTATAATGATAGGATCAACATATGGGCGTCTTGTTGGCATGTTTGTCGTAAAATATTACAGAAAGCTCAACATTGATGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGAGGCTCAATGCGGATGACAGTATCTCTCTGTGTCATTATGGTTGAAATCTCAAATAACTTAAAATTCTTGCCTCTTATTATGCTTGTTCTTCTTATATCGAAGGCTGTTGGTGATGCTTTTAACGAAGGTATCTATGAGGAGCAGGCTCAATTGAGGGGCATTCCATTGCTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAAGCCTGTGGGAGTGGAAGGGTGGTCTCTTTCCCTCGTGTTGTTAAGGTTTCAGACGTAGTTTCCATTCTGCGAAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTGCTTCGTAGTCATTTATTGGTAATTCTGCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCTAGAGGTGGGGGAGGATCAATTAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTATTGAGGATATACATCTAAGTTCAGATGACTTAGAAATGTACATCGATCTTGCTCCATTTTTGAATCCGTCACCATATATTGTACCGGAAGATATGTCTTTGACAAAGGTGTACAATCTTTTCCGTCAACTTGGTCTAAGGCACTTATTTGTTGTTCCTCGTCCATCACGTGTGCTTGGTTTGATAACAAGAGAAGATTTGTTGATTGAGGACAAAGAAAATGTGAATACGTTAGAGCTTCAGTCAACTAGTGTAAGAATTCCGCATCAGAATAAAAGATTGATGACAAGAAATATAGATGTGGAGCGCCCTTTGCTAAACGGACTGCTTCAGAGTCAGATACCTGACTGA 2436 0.415 MLANHFQNGIETARLVWSRIPNSEESQLLDDAVGILKKNDGGGVESLDYEVIENFAYREEQAQRGKLYVSYLLVVKWFFALLIGIFTGLAAVFINIAVENFAGWKFSVTFDIIQKSYIAGFVVYVLINLALVFSSVYIITQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISELRSKLLPFSLGQEDYSFAELFPMAVIGVIGGILGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSILTSTISFGLPLLRQCSPCPDSDPASGIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVITFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIDEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVVKVSDVVSILRSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGGSIRHDSGEFAKPVSSKGICIEDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITREDLLIEDKENVNTLELQSTSVRIPHQNKRLMTRNIDVERPLLNGLLQSQIPD 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1903 811 SMART cbs_1 719 767 IPR000644 -
Aed11g1903 811 SMART cbs_1 605 657 IPR000644 -
Aed11g1903 811 CDD ClC_6_like 45 584 - -
Aed11g1903 811 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PRINTS Chloride channel signature 571 585 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PRINTS Chloride channel signature 533 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PRINTS Chloride channel signature 480 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PRINTS Chloride channel signature 515 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 803 - -
Aed11g1903 811 Pfam CBS domain 717 764 IPR000644 -
Aed11g1903 811 Pfam CBS domain 613 656 IPR000644 -
Aed11g1903 811 Pfam Voltage gated chloride channel 132 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed11g1903 811 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed11g1903 811 PRINTS Plant CLC chloride channel signature 432 448 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed11g1903 811 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed11g1903 811 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed11g1903 811 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed11g1903 811 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 763 - -
Aed11g1903 811 Gene3D Clc chloride channel 69 585 - -
Aed11g1903 811 SUPERFAMILY CBS-domain pair 589 763 IPR046342 -
Aed11g1903 811 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 803 - -
Aed11g1903 811 Gene3D - 605 769 IPR046342 -
Aed11g1903 811 ProSiteProfiles CBS domain profile. 716 773 IPR000644 -
Aed11g1903 811 SUPERFAMILY Clc chloride channel 54 586 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1903 Aed-Chr11 21919864 21928032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1903 1 781 Ion Channels AT5G26240 81.841 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1903 K05016 - gmx:100811908 1525.76