Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1897 ATGGAATCGGGGGCGAGATCGGGTGGTTCTGGGGTTGTTGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGAGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTAATGCTTCCACCTCTCGGAAGCTCTACGAATCGACGAAAAGGCCAAACGTGAACGTGTCCTCGAGTGATTCTGGATCAAGCGACGAGCTGCTGATGCCTCCTGGTAGAAGGCTTGGTCCTGAGACTATTCGAGTTTGCAATGGTTTGGCTGCTTCTGAGCGAGGTGGGAGTGAAATAAGTCGGAAGAGGGATAGAGTGGAACGAATTAGCGGTAGTGGGGAGGGCATTGCTGCGGATAAAAGTTTGGAACAGTGGGAAAGGAAGCGTAGTAAGTTGGATGTGTACGATTTCGATGAATACGATGGCATGGATGTGGAGAACATGAGCAGGAGGAGGCATTTGGATGGTCATGGAGGAGGAGGAGGAAGGTTCATAGTGCATGCTTCTAGAAGTGTTCTTGATAAGAGAAAGAACTCCTATGGTGACAGGCCTAGTGGCTTGTATCAGGGGGATAATGTTGGTCACAGTAGGTTCAAGATGAACAGGGACGGTGCTCGGGTACCTCTACCCACGCAGAGGGAAAAGTTTAATTCAGATGAGTCCATTCGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTCAATAAGAAGAAGGTGGGTGGTCCATCAGAACAGTATTATGACCATCACAAACCCTTGAAAAGCAGGCAAAGGTTGAAGACCGAAGAGACTGCCCAGAGGTTGAAGACTGAAGAGATTGCCATGAGGTTGAAGACCAAGGAGACTGCCAAGAGGAATATTCCAATTCGTCCGGAAACGAAACCTGTTGAGAAACCAGGATTACTTAAGAGGCCAGAGAAGAAAAGGATAGCATCAACAAAACCGTTGTCAAGCAAGGACAGTAAGGATGATGATGATGAAAGGGATTCAGATAATAGTGACACATCACTGAATCCAGGAATAAGAAATACCGAAGCTCGTAAACCTGCAAAAAAAATAATCTTTGAGGATGAGCAGACTCCTGTGCATGAACCCCCCCAAACCACAAGAACAAAAGAAGGAAAAATTAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAACAAATAAGGGAGATGCTGCTGAATTCAGGTTGGACCATAGACTATCGACCTCGAAGGAACAGAGATTACCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGATGATGCTGATGAGGCCAAGGCCAAAGGGGATGGTTCTTTTGCTCCTATTGCAGATGATGTCCTCAGTCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAGAAAATGTATGATAGTGAAAGTGATAATGAAAAAGAGCCTCAAAGAAAAAGATCTGCTAGCAACAAGCATAATATGAATAGCATGGATAGTGATAGCAATGAGGAGAAATTAAGCTCCTTTTTAAAGCAGGGAAGTAAGTCAATGAAAAACAGAATGTTTGAAAATACCTCTATAAGTGCTCACTCTAAAATTCAGAATGCTACTGATGGAACAGAAAAATCATTATTTGGGGGTGATCCTCATATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGTTTTGTTCCATATATGGGCAAGCGGACAGTTCTTGCCTGGTTAGTTGACTCTGGAACTGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAGATCCTTACAGTTTCAAAGTTTGAGCTTCATGCTGGAAGCAAATTGCCACAGCCATATCAAAATATATATTTAGAATCTGGAGTTTCACTTCTACAGTGCCAGATAGATGCATGGAATAAACAAGAGCATGCTGAAAAAATTGGTTTCCGTTCAGTGGATATTGATGGCAATGATCCAAATGATGATACCTGTGGTATATGTGGTGATGGAGGGGATTTAATCTGCTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGGAAAAGATGATTCACCTATCATGACTCTTGCACTAAGGAGATGGATACCCTTCCTAATAACATCAATACATCAAGCCTTTCTTTTTGTGGAGAAGAGTGCAAAGAGGCAACTTTCTGAACTCTTGAAGAAATACCTTGGTACCAAGCATGAACTGGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCAGCTTGCAGGGGAATTACCCAGATGGTAGAATGCAATTCCAAGTTGGCTATTGCATTGACTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAATGTTTTATATAATAGTGGATCAAATTTTAGTCGGTTGAGCTATAGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCATGGAACTAAGATAGCAGAGATGCCATTCATTGGAACACGCCATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGGTAAACCTTGAAGCTATGGCCCTTTGCTCTCTGAAGGTTGAGAAACTAGTTATTCCTGCAATTGCGGAACTCACACATACATGGACAACAGTTTTTGGCTTCACATATCTGGATGAATTACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCCGGTTCTGAGAAAACAGAAAATGGAGACAATGATTTCATCAAGACTGAAATGGGAAATAGGTCAGATATGGGTTCTTCAACTCCACAAGATCCTCATGGAAGTGATGGTGTCATTTCAAATCCTGCTAATGAGACAAATGATGAATGCAGTGATGCTTCTCAAGAATTAAACAACCAAGTTTTGGTTGATTGGACCCTCGGTTCCAAATCTCATTCTGAGGAAATGGTGTCTGATTCAGTTTCAGATAAATGTGTTTCTCCTTCTAGAACTACTTACAGTGGACTAGAAATAACGAATAAAGTAGTGGCTGCTTCCCCTGTTGCTGGATTAGATTCTTCTACCAAATTTCAATCCATTTCTCTGATTGACACTTCTGTTAGTAGTCACCCAGTAGATATTCTGAAAGTTCAAGCTTTGGTTCAAGAAACTAGTTCTGATCCATGTTCAGCAGAAATAAACCTTGACAAGAAGTGCCAGTCGTCCACTGCTATGAATTGTGATTCATCGGAGCTTGACATTAACCCAGTGTTGGATTCTCAAATGGAAGACAATACTCCGCCTACCAAAGAGGTTTATATGAATGACGCTCTTGAAGTTGTTCCTTCAGGGAATATATCTGAAGAGAATATTACAAAGGGGAATAATCAAAATGTAGATGAATCCAGTTCTGCTCTCAATCATGCTGATGAAAGTTCGTTGCAAGTAGGATCCGTTTCCAATGGTGAAATTGGATGTGAGAATGAGGAGTTACGTTTGAAGCCAGGAGTTGCTTCAAATGAAATGTATTTTAATGAAAGTGGCGTAAATGCTTCGGGTGATAGTTCCGATACTGTTCTGATCTCACAGAATGATTGA 3819 0.4216 MESGARSGGSGVVVKSRNSSGCLIVRKKGDGLGATANASTSRKLYESTKRPNVNVSSSDSGSSDELLMPPGRRLGPETIRVCNGLAASERGGSEISRKRDRVERISGSGEGIAADKSLEQWERKRSKLDVYDFDEYDGMDVENMSRRRHLDGHGGGGGRFIVHASRSVLDKRKNSYGDRPSGLYQGDNVGHSRFKMNRDGARVPLPTQREKFNSDESIRVQGKNGVLKVMVNKKKVGGPSEQYYDHHKPLKSRQRLKTEETAQRLKTEEIAMRLKTKETAKRNIPIRPETKPVEKPGLLKRPEKKRIASTKPLSSKDSKDDDDERDSDNSDTSLNPGIRNTEARKPAKKIIFEDEQTPVHEPPQTTRTKEGKIKRGSGTEKQKLREQIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLIDDADEAKAKGDGSFAPIADDVLSQLTRKTRKKMEKELKKKKKMYDSESDNEKEPQRKRSASNKHNMNSMDSDSNEEKLSSFLKQGSKSMKNRMFENTSISAHSKIQNATDGTEKSLFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYMGKRTVLAWLVDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNKQEHAEKIGFRSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASGTSGKDDSPIMTLALRRWIPFLITSIHQAFLFVEKSAKRQLSELLKKYLGTKHELEAGFSWSLIHRTDEDSEAACRGITQMVECNSKLAIALTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSAIESVNLEAMALCSLKVEKLVIPAIAELTHTWTTVFGFTYLDELLRQEMKSLNMMVFPGSEKTENGDNDFIKTEMGNRSDMGSSTPQDPHGSDGVISNPANETNDECSDASQELNNQVLVDWTLGSKSHSEEMVSDSVSDKCVSPSRTTYSGLEITNKVVAASPVAGLDSSTKFQSISLIDTSVSSHPVDILKVQALVQETSSDPCSAEINLDKKCQSSTAMNCDSSELDINPVLDSQMEDNTPPTKEVYMNDALEVVPSGNISEENITKGNNQNVDESSSALNHADESSLQVGSVSNGEIGCENEELRLKPGVASNEMYFNESGVNASGDSSDTVLISQND 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1897 1272 Pfam PHD-finger 704 746 IPR019787 -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 475 497 - -
Aed11g1897 1272 ProSitePatterns Zinc finger PHD-type signature. 704 743 IPR019786 -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 34 64 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 32 74 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 1007 1040 - -
Aed11g1897 1272 ProSiteProfiles Zinc finger PHD-type profile. 701 746 IPR019787 -
Aed11g1897 1272 PANTHER PHD FINGER FAMILY PROTEIN 1 759 - -
Aed11g1897 1272 CDD PHD2_CHD_II 704 743 - -
Aed11g1897 1272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 768 IPR013083 -
Aed11g1897 1272 SMART PHD_3 703 744 IPR001965 -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 239 323 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 342 356 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 469 519 - -
Aed11g1897 1272 Pfam Tify domain binding domain 626 676 IPR032308 -
Aed11g1897 1272 PANTHER PHD FINGER FAMILY PROTEIN 791 1210 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 498 519 - -
Aed11g1897 1272 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 759 - -
Aed11g1897 1272 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 791 1210 - -
Aed11g1897 1272 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 842 989 IPR000182 GO:0016407
Aed11g1897 1272 MobiDBLite consensus disorder prediction 541 567 - -
Aed11g1897 1272 SUPERFAMILY FYVE/PHD zinc finger 694 749 IPR011011 -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 1004 1040 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 237 382 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 1194 1229 - -
Aed11g1897 1272 Coils Coil 467 487 - -
Aed11g1897 1272 MobiDBLite consensus disorder prediction 365 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1897 Aed-Chr11 21865531 21873874 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1897 4 989 PHD Transcription Factor Family AT4G14920 47.628 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed11g1897 TDBD 6.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1897 - - gmx:102666194 1966.81