Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1895 ATGGAATCGGGAGTGAGATCGGGTGGTTCTGGGGTTGTAGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGAGAAAGAAAGGGGATGGGTTGGGCGCTAGTGCTAGTGCTACTGCTTCCACCTCTCGGAAGCTTTATGAATCGATGAAAAGGCCGAACATCAACGTGTCTGTGTCCTTGAGTGATTCTGGATCAAGCGATGAGTTACTAATGCCTCCTGGTAGAAGGCTTGGTCCCGAGACTATTCGAGTTTGCAATGGTTTCGCTGCCTCTGAGCGGGGTGGGACTGAAATTAGTCGAAAGAGGGATAGAGTTGAACGTATTGCTGCCGAGAAAGGGTTGGAGCAGTGGGAAAGGAAGCGTAGTAAGTTGGATGCGTACAATTTCAATGATTACGATGGCATGGATGTGGAGAACATGAGCATGAGGAGGCATTTGGATGGTCATGGAGGAGGAGGAAGGTTTATGGGATCAGTGCATGCTGCAGCTAGAAGTGGCTATGATAGGGAGTTCAAAACAGGATCAAGTGGACGAATTCTTGATAAGAGAAAGAACACTTACGGTGACAGGCCTACTGGCTTGTATCCAGGAGATAATGTTGATCACAGTAGGTACAAGTTAAACAGGGATGGAGTCTGGGTACCTCTACCCTTGCATAGGGAGAAGTTTAATCCAGATGAGTCCATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGGCCATCAGAACAGTATTATGATCATCACAAACCCATGGAAAGCAGGCAAAGGTTGAAGACAGAAGAGACTGCCAAGAGGTTGAAGACCGAAGAGGCTGCCAAGAGGAATGTTCCAATTCGGCCTTTGTTATACTTGGAAACGAAACCTGTTGAGAAACCAGGATTACTTAAGAGGCCAGAGAAGAAAAGGATAGCATCAAGAAAATCGTTGTCAAGTAAGGACAGTAAGGGTGATGAGGAGGATTCAGATAACAGTGACACATCATTGAATCTGGGAATAAGAAATACTGAAGCACGGAAGCCAGCAAAAATAATAATGTCTGAGGATGAGCAGACTCCTGTGCATGAAAAACTCCCAACCACAAGAACAAAAGAAGGAAAAATTAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAACGAATAAGGGATATGCTGCTGAATTCAGGTTGGACCATAGACTATCGACCTCGAAGGAACAGGGACTATCTGGATGCTGTTTACATTAATCCAGCAGGCACAGCCTATTGGTCTATCATCAAGGCCTACGATGCACTTCAAAAGCAATTAAATGAAGATGCTAATGAGGCCAAGGCCAAAGGGGATAGTTCTTCGTTTGCTCCTATTGCAGATGATGTGCTCAGTCAGCTAACAAGGAAAACTAGAAAGAAAATGGAGAAAGAATTGAAAAGGAAGAAAAAATATGATATTGAAAGTGATAATGAAAAAGTGCCTCAAATAAGAAGATCTGCCAGCAACAAGCGTGATATGAATAGCACAGATGGTGACAACCACGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGGAGTAAGTCAATGAAAAATAAAATGTTTGAAAATACCATTATCAGTTCTCGCTCTAAAATCCAGAATGCTACCAATCACTCAAATGATGGAATAGAAAAATCATTATTTGGATGTGACCCTCATAGACATGGACGGCAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAACGGATCAAATTCGGAATCTGATGGCTTTGTACCATATACGGGCAAACGAACAGTTCTTTCCTGGTTGATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTCCAGTACCGTAGACGGAAGAAAGTCATGCTAGAGGGGTGGATCACAAGAGACGGCATTCATTGTGGCTGCTGCAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATGGCCACAGCCATATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTGCAGTGCCAGATAGATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTGGATATTGACGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCACCAGAGCTGCTTGGATATACAGATGCTTCCTCCCGGTGAATGGCGTTGTTCAAATTGCACCTGTAAATTTTGTGGTATAGTCAGTGAAACTTCTGAAAAAGATGATGCATCTGTGTATGTCCTACACACTTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCACTAAGGAGATGGATACTGTTCCTAATAACATCAATACATCCAGCCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAGCTGGAAGCGGGTTTTTCATGGTCTCTCAATCATAGGACAGATGACGACTCAGAGGCAGCTTGCAGGGGTATTAGCCAGAGGGTAGAATGCAATTCCAAGTTGGCTATTGCACTGACTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTAGGATTAATTTAATCCGTAACACTTTATATAATAGTGGATCAAACTTTAGTCGGTTGAGCTATAGTGGCTTTTACACTGCTATATTGGAGAGAGGGGATGAAATCATTGCAGCAGCATCTATCAGGTTCCATGGAACTCAGATAGCAGAGATGCCATTCATTGGAACTCGTCATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCTTCCATTGAATCGACCCTTTGCTCTCTGAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACAAATACTTGGACAACAGTTTTTGGCTTCACACATCTGGAAGAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTGGTGGAACAAGAAAAACACGAGGGTTCTGAGAAAATGGGAAATGGAGACAATGATTTTATCAAGACCAAGATGGAAGATAGGTCAGATATGGGTTCTTCAACTCCACAAGATGCTCATGGAAGTGATGATGTTAGTTCAAATCCTGCTAATGAGACGGATGATGAATGCAGTGATGCTTCTCAAGAACTAAACAACCAAGTTTTGGTTGATGGGACCCTCTGTTCCAAATCTCATTCTGAGGAAATGGTGTCTGATTCCGTCTCAGATAAATGTGTTTCTCCTTCTAGAAGTACTCACGGTGAACTAGACATAAAGAATAAAGTAGTGGCTGCTTCCCCTATTGATGGATTAGATTCTTCTACCAAATTTCAATCCATTTCTCCAATTGACACTTCTGTTAGTAGTCACCCAGTTGATATTCTGAAAGTTCAAGCTTTGGTTCAGGAAACTAGTTCTGATCAATGTTCAGCAGAAGTAAACCTGAACCAGAAGTGTCACTTGTCTACTGCTATGAATTGTGATTCATCGGAGCTTGACATTAATCCAGTGTTGGATTCTCAAATGGAAGACAATACGCTGCCTACCAAAGAGGTTTATATGAATGACGCTCTTGAAGTTATTCCTTCAGGGAATATATCTGAAGAGAATATTACAAAGGGAAATAATCAAAATGTAGATGAATCCAGTTGTGCTCTCAATCTTGCTGATGAAAGTTCGTTGCAAGTAGGATCTGTTTCCAATGGTGAAATTGGATGTGAGAATGAGAAGGATTTACATTTGAAACCAGAAGTTGCTTCAAATGAAAGCGGCGTAGATGCTTCCGGTGATAGTTCCGAGCCTGTTCTGGCCTCACAGAATGACTGA 3900 0.4197 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLGASASATASTSRKLYESMKRPNINVSVSLSDSGSSDELLMPPGRRLGPETIRVCNGFAASERGGTEISRKRDRVERIAAEKGLEQWERKRSKLDAYNFNDYDGMDVENMSMRRHLDGHGGGGRFMGSVHAAARSGYDREFKTGSSGRILDKRKNTYGDRPTGLYPGDNVDHSRYKLNRDGVWVPLPLHREKFNPDESIRVQGKNGVLKVMVNKKKVGGPSEQYYDHHKPMESRQRLKTEETAKRLKTEEAAKRNVPIRPLLYLETKPVEKPGLLKRPEKKRIASRKSLSSKDSKGDEEDSDNSDTSLNLGIRNTEARKPAKIIMSEDEQTPVHEKLPTTRTKEGKIKRGSGTEKQKLRERIRDMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNEDANEAKAKGDSSSFAPIADDVLSQLTRKTRKKMEKELKRKKKYDIESDNEKVPQIRRSASNKRDMNSTDGDNHEEKLSSFIKQGSKSMKNKMFENTIISSRSKIQNATNHSNDGIEKSLFGCDPHRHGRQSKKHGRCTLLVRSSNNGSNSESDGFVPYTGKRTVLSWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKWPQPYQNIYLESGVSLLQCQIDAWNRQEHSEKIGFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCSNCTCKFCGIVSETSEKDDASVYVLHTCNLCEKKYHDSCTKEMDTVPNNINTSSLSFCGKECKELSEHLKKYLGTKHELEAGFSWSLNHRTDDDSEAACRGISQRVECNSKLAIALTVMDECFLPVIDRRSRINLIRNTLYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTQIAEMPFIGTRHIYRRQGMCRRLFSSIESTLCSLKVEKLVIPAIAELTNTWTTVFGFTHLEESLRQEMKSLNMMVFPGIDMLQKLLVEQEKHEGSEKMGNGDNDFIKTKMEDRSDMGSSTPQDAHGSDDVSSNPANETDDECSDASQELNNQVLVDGTLCSKSHSEEMVSDSVSDKCVSPSRSTHGELDIKNKVVAASPIDGLDSSTKFQSISPIDTSVSSHPVDILKVQALVQETSSDQCSAEVNLNQKCHLSTAMNCDSSELDINPVLDSQMEDNTLPTKEVYMNDALEVIPSGNISEENITKGNNQNVDESSCALNLADESSLQVGSVSNGEIGCENEKDLHLKPEVASNESGVDASGDSSEPVLASQND 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1895 1299 Coils Coil 431 451 - -
Aed11g1895 1299 CDD PHD1_AIRE 713 752 - -
Aed11g1895 1299 PANTHER PHD FINGER FAMILY PROTEIN 1 1244 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 304 386 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 1045 1071 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 1016 1071 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 481 519 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 249 272 - -
Aed11g1895 1299 SMART PHD_3 712 753 IPR001965 -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 475 519 - -
Aed11g1895 1299 ProSiteProfiles Zinc finger PHD-type profile. 710 755 IPR019787 -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 251 272 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 1282 1299 - -
Aed11g1895 1299 ProSitePatterns Zinc finger PHD-type signature. 713 752 IPR019786 -
Aed11g1895 1299 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1244 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 1265 1299 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 304 333 - -
Aed11g1895 1299 SUPERFAMILY FYVE/PHD zinc finger 702 758 IPR011011 -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 351 386 - -
Aed11g1895 1299 MobiDBLite consensus disorder prediction 1016 1044 - -
Aed11g1895 1299 Pfam Tify domain binding domain 635 685 IPR032308 -
Aed11g1895 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 805 IPR013083 -
Aed11g1895 1299 Pfam PHD-finger 713 755 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1895 Aed-Chr11 21853701 21864003 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1895 4 1034 PHD Transcription Factor Family AT4G14920 49.859 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed11g1895 TDBD 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1895 - - gmx:100801863 2159.41