Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1887 ATGCGACGCAAGGTGAAGAATGTGGGCAAAACCCTCGTCAGTCGTACCCAGGGTACCAAGATTGCTTCGGAAGGACTCAAACATCGGGTGTTTGAGGTCTCATTGGCTGATCTTCAAGGCGATGAGGATCATTCCTTCAAGAAGATTCGTTTGAGAGCTGAGGATGTTCAAGGGAAGAATGTCCTGACTAACTTTTGGGGAATGGATTTCACAACTGACAAGCTGAGGTCCTTGGTGCGAAAATGGCAAACTTTAATTGAAGCTCACGTGGATGTGAAGACCACTGATAGTTATACTTTGAGGTTGTTCTGCATTGGATTTACTAAGAGGCGCAGTAACCAGGTGAAGAGGACCTGTTATGCTCAATCAAGTCAAATCAGACAGATTCGCAGGAAGATGAGAGAGATCATGGTCAACCAGGCCACAGCCTGTGATTTGAAAGAATTGGTGCGCAAGTTCATCCCTGAAATGATTGGAAAGGAGATTGAGAAGGCAACATCTAGCATCTATCCTCTTCAGAATGTGTTCATTCGTAAAGTTAAGATCCTTAAAGCTCCAAAGTTTGATCTTGGAAAGCTGATGGAGGTTCATGGGGATTACTCAGAAGATATTGGTGCCAAGGTGGACAGACCCGCTGATGAAACATTGACTGAGGAAGTCACTGAAATAGTTGGAGCTTGA 681 0.4464 MRRKVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDHSFKKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRLFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATACDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDIGAKVDRPADETLTEEVTEIVGA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1887 226 PANTHER 40S RIBOSOMAL PROTEIN S3A 4 226 - -
Aed11g1887 226 SMART Ribosomal_S3Ae_2 1 186 IPR001593 GO:0003735|GO:0005840|GO:0006412
Aed11g1887 226 Hamap 40S ribosomal protein S1 [RPS3A]. 3 223 IPR027500 GO:0003735|GO:0005840|GO:0006412
Aed11g1887 226 ProSitePatterns Ribosomal protein S3Ae signature. 26 38 IPR018281 GO:0003735|GO:0005840|GO:0006412
Aed11g1887 226 PANTHER 40S RIBOSOMAL PROTEIN S3A 4 226 - -
Aed11g1887 226 Pfam Ribosomal S3Ae family 5 186 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1887 Aed-Chr11 21823228 21828524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1887 6 226 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 86.036 6.89e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1887 K02984 - gmx:100808747 432.565