Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1885 ATGGGAACTGCCCAACAAACGCAGGATAACGTACGTCTTAGGTTAGTTGTCATCCTAATCAAATCAAAGGTTGTGTTCCGTGCGTGCTATGGGGTTGCGCTCTACATTAGAGAATGTAGCCTCTTGTCTTTCGATTCAGTAGTGCTACCTCTCTGGAGTCTGGACATGGACACGCCAGAGAGGAACCAGATCACCGCTGCTCTCTCTAAGTTTGAGGATTCACCTGTCTTCAACTACATCAATAATTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGACCTATTCGTCCCCTCCATCTGTTTTCACATCACCCCATGTCACCTGTCTCAAGGAATCCAAATTCCTCCGGAGACATAATCCGTTGGGCACATCAAAGCCTAAGCTTGTTTCTTCTGAAGATGTAAATAAAGTTCAATCAAGTGAAGAGACTCTTGCACATCATAACTCCAGTGAATTACTGGAAAACACTGATAAAGGGATCTCAGAAGAGGTGCCGCAAGCTTTGAAATATAATTGTGGTAGCCCTAGCTATGATCGTCCACTTTGTGGTAGTGATGAGGCTGGAGAGGCAGCAGCAGATGTTGGATGTAAAAGTTCGATCGAGGGTGAAGTGCATCTTCACATGGAGCCAAAGACTGAAGGTCCAGACTGTTATTGGGATAGTTTAATTCCTGATATGCTCATTTTTAATTCTCCAGGTGCCGCTGAAGCTTTTAAGGGTCTAATTCACAAACCCTTGGACTCTTCTATTCGCCTGACCGATTTTATGTCCATGCTACCACATTCTACCATCAATAATGGTAGGAAAATGCACATTGTTGATTCACTTGCTTCTGAGCCGATAACAGCAGCCACGGGCACGGACCAAACACAAGATCATCATCTTGCCAATGTTGCTTTAGTGACTAGCAATCCAAATGACCAGCTTGTTTCTGTCACGCACCGTACCATTAGGAGGCGCTGTCTAGACTTTGAGATGGTCAATGTGCAAAGGAAGAACTCTGATGATAATTCAAACACTGGTTCTAGTACATCCAAGTCTGATGAGAGGAATGTTACTAATCAAATGCAACTGCTTCCTGCAAAACGCAATGGGAATTTACACAGGGGAATTTTGCCAGGAATTGGTCTACACTTGAATGCACTTGCTGCCTTAAAAGAATACAAGGGCATACAAATTGAAAACTTGTCTTCTGGAAGCTCTACTTGTTTGCAAATCTCTACAAGCCAAGAACATGAACATCAGCATCTATCATTGATACCTGTATCATCTGAAAGAGAATTGGATCCATCGGACAATGGGGTTCAGCTTGCCGAAGATTGTTACCAGCCATCAGCTTACATAGCTGGTGAAGACTTCAATCAGAACAGCCCCAGAAAGAAAAGGCAAGTGCAGCGTAAGTCAGAGACACTGGGAGAAACTGAGGGCTGTAAACGCTGCAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGCGAGTGCTTTGCTGCTGGTGTATACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAATCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGATTCTGTACCTGAAATTGGGGATGATCCAAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATTGGCTGTAGATGTGAAGGGTGCAAGAATGCATTCGGGAGAAAGGATGGTTCTGCTCCTTTAGGCACAGAAACTGATCCAGAAGAAACAGAAGCATCTGACAAGGGTGTGGCAGAAAAATCTTTACAGAAAACTGAAGATCATCCAGATCCTGCTATTGTGTCAACACCATTACGGCTTTCCAGGCCATTGCTTCAGTTGCCCTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCATCTCTGGCGCTGAATTGTTTGCCAGCCAAAAGCTTGGGAAACCAAACCCTCTTTGGTCACAAGCTAAGCAGCATTTTCAAAGTGTTCCAGATGACGAAATGAAGGATATTCTGCGAGGTGATAGCTCTCCTATCAGTATCACTTGCATCAAAACCTCTTCTCCAAATGGCAAGAGGATCTCTTCTCCCAACTGCGACTTGGGATCATCTCCAAATCGCAGAGGTGGCAGGAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCCTAG 2322 0.4376 MGTAQQTQDNVRLRLVVILIKSKVVFRACYGVALYIRECSLLSFDSVVLPLWSLDMDTPERNQITAALSKFEDSPVFNYINNLSPIKPVKSVPISQTFNSLTYSSPPSVFTSPHVTCLKESKFLRRHNPLGTSKPKLVSSEDVNKVQSSEETLAHHNSSELLENTDKGISEEVPQALKYNCGSPSYDRPLCGSDEAGEAAADVGCKSSIEGEVHLHMEPKTEGPDCYWDSLIPDMLIFNSPGAAEAFKGLIHKPLDSSIRLTDFMSMLPHSTINNGRKMHIVDSLASEPITAATGTDQTQDHHLANVALVTSNPNDQLVSVTHRTIRRRCLDFEMVNVQRKNSDDNSNTGSSTSKSDERNVTNQMQLLPAKRNGNLHRGILPGIGLHLNALAALKEYKGIQIENLSSGSSTCLQISTSQEHEHQHLSLIPVSSERELDPSDNGVQLAEDCYQPSAYIAGEDFNQNSPRKKRQVQRKSETLGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNAFGRKDGSAPLGTETDPEETEASDKGVAEKSLQKTEDHPDPAIVSTPLRLSRPLLQLPFSSKGKPPRSFVTTISGAELFASQKLGKPNPLWSQAKQHFQSVPDDEMKDILRGDSSPISITCIKTSSPNGKRISSPNCDLGSSPNRRGGRKLILQSIPSFPSLTPHP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1885 773 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 56 772 IPR044522 GO:0003700
Aed11g1885 773 ProSiteProfiles CRC domain profile. 485 610 IPR005172 -
Aed11g1885 773 MobiDBLite consensus disorder prediction 128 159 - -
Aed11g1885 773 MobiDBLite consensus disorder prediction 730 748 - -
Aed11g1885 773 MobiDBLite consensus disorder prediction 133 155 - -
Aed11g1885 773 MobiDBLite consensus disorder prediction 341 361 - -
Aed11g1885 773 SMART CXC_2 570 611 IPR033467 -
Aed11g1885 773 SMART CXC_2 484 525 IPR033467 -
Aed11g1885 773 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 56 772 - -
Aed11g1885 773 MobiDBLite consensus disorder prediction 730 773 - -
Aed11g1885 773 MobiDBLite consensus disorder prediction 613 649 - -
Aed11g1885 773 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 487 522 IPR005172 -
Aed11g1885 773 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 573 608 IPR005172 -
Aed11g1885 773 MobiDBLite consensus disorder prediction 625 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1885 Aed-Chr11 21808472 21813836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1885 71 772 CPP Transcription Factor Family AT4G14770 44.536 2.32e-154 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aed11g1885 TCR 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1885 - - gmx:100815907 1164.83