Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1858 ATGATGATGAGAAGAGCAATAAGATGCCGTGATGAGGGTTTGAAGAAGGGGCCTTGGAGTCCAGAAGAGGATAAAATATTAGTGGATTACATTCAGAAACAGAAACATGGGCATGGAAGTTGGAGTGTCCTTCCAAAGCTTGCAGGACTGAACAGGTGTGGAAAGAGTTGCAGACTTAGGTGGACTAATTACCTCAGGCCTGGTATCAAGCGAGGAAAGTTCTCTGATGAAGAACGCCAACTCATCATCAATTTGCATTCAGTTCTCGGAAATAAGTGGGCGGCTATAGCATCCCATCTGCCAGGGAGGACTGATAATGAGATAAAGAATTTGTGGAACAGTCATTTAAAGAAAAAGTTAGACCGTCTTCCAATATCAACTCTTCTACAACAGATATTGGCTGCTCAAATTGTCAAACTCCAATTATTGCAAAACAACATACTCCACCACTTTGGTTCACCATATCCATATGCATCAAACTCCTCGCTTCCGAATTTGGTTTCAGCTTCACCTGAACTCAAGGAAGCAGAAAACATCGACTTTGACTGGGGATCAGATTTAGATTTCATGGATCTGCAGCTGGAAGCAACCGATACTGATTATTGGAAAGCTGGTTTCATAGAGAATTAA 630 0.419 MMMRRAIRCRDEGLKKGPWSPEEDKILVDYIQKQKHGHGSWSVLPKLAGLNRCGKSCRLRWTNYLRPGIKRGKFSDEERQLIINLHSVLGNKWAAIASHLPGRTDNEIKNLWNSHLKKKLDRLPISTLLQQILAAQIVKLQLLQNNILHHFGSPYPYASNSSLPNLVSASPELKEAENIDFDWGSDLDFMDLQLEATDTDYWKAGFIEN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1858 209 CDD SANT 73 116 IPR001005 -
Aed11g1858 209 Gene3D - 15 70 - -
Aed11g1858 209 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Aed11g1858 209 CDD SANT 18 65 IPR001005 -
Aed11g1858 209 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 142 - -
Aed11g1858 209 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 5 142 - -
Aed11g1858 209 SMART sant 70 118 IPR001005 -
Aed11g1858 209 SMART sant 15 67 IPR001005 -
Aed11g1858 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Aed11g1858 209 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Aed11g1858 209 Pfam Myb-like DNA-binding domain 16 65 IPR001005 -
Aed11g1858 209 SUPERFAMILY Homeodomain-like 13 112 IPR009057 -
Aed11g1858 209 Gene3D - 73 120 - -
Aed11g1858 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 65 IPR017930 -
Aed11g1858 209 ProSiteProfiles Myb-like domain profile. 11 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1858 Aed-Chr11 21670701 21671415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1858 3 131 MYB Transcription Factor Family AT1G34670 70.543 3.37e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g1858 Myb_DNA-binding 6.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1858 K09422 - gmx:100808232 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1858 11 21670701 21671415 Aed11g1858 11 21670701 21671415 ECH