Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1853 ATGCTAACGGTAGCTCCTTCTGTTGATGCCGCCAAAGAGGTGGTGGTTTCTAGCCCAAAAACTGACCAAAACCATAACCAAACTACCCATGTCTTCAAATCTAAATTACCAGATATACCTATCTCCAACCACCTCCCTCTCCACGCCTACTGCTTCGAGAAACTCTCCGAATTCGCCCACCGCCCATGCCTCATCGTCGGCCCTGCCGCCAAGACCTACACCTACGCTGAGACGCACCTCATTTCCCGCAAGATCGCCGCCGGATTGTCCAACCTCGGAATCTGCAAAGGCGACGTCGTCATGATCCTCCTCCAGAACTCTGCAGAGTTCGTTTTCTCCTTCCTCGCCGCCTCCATGATCGGCGCCGTCGCAACCACCGCCAATCCCTTCTACACCGCCGCCGAGATCCTCAAGCAGCTCACCGTCTCCAAGGCCAAGCTCATCATAACGCAAGCAATGTACGTGGACAAGCTCCGCAACCACGACGGCGCCAACCTCGGCGAGGACTTCAAGGTCGTCACCGTCGACGATCCGCCGGAGAATTGCCTCCACTTCTCTGTGCTCTCGGAGGCGAACGAGAGCGAGATGCCGGAGGTGGAGATCCACCCTGAAAACGCGGTGGCGATGCCGTTCTCCTCCGGCACGACGGGGTTACCGAAAGGAGTGGTTCTGACTCACAAGAGTTTAACCACGAGCGTGGCGCAACAAGTGGACGGAGAGAATCCTAATCTCTACCTCACAACCGAGGACGTGCTCCTCTGCGTGCTTCCGTTGTTTCACATATTCTCGCTCAACAGCGTGCTATTGTGCGCGCTCAGGGCCGGGAGTGCGGTTTTGTTGATGCAGAAGTTCGAGATTGGGACGCTGCTGGAGCTCATACAGCGGCACCGGGTCTCGGTGGCGATGGTGGTGCCGCCGCTAGTGCTGGCGCTAGCCAAGAATCCCATGGTGGCGGATTTTGACCTCAGTTCGATACGGTTAGTGCTGTCGGGAGCTGCTCCCTTGGGGAAGGACCTCGAGGAGGCTCTCAAGAACAGGGTGCCTCAAGCTGTTTTGGGACAGGGGTACGGGATGACAGAAGCAGGACCAGTGCTGTCCATGTGTCTGGGGTTTGCAAAGCAACCATTCCCAACAAAATCAGGTTCTTGTGGTACCGTTGTCAGAAATGCAGAACTCAAGGTTGTTGAACCTGAAACTGGTCGCTCTCTTGGCTACAATCAACCCGGTGAAATTTGCATCCGAGGCCAACAGATCATGAAAGGATATCTTAACGATGAGAATTCCACAGCATTGACCATAGATGCTGAGGGTTGGCTTCACACCGGTGATGTTGGCTATGTAGACGATGATGATGAAATTTTCATTGTTGACAGGGTCAAAGAACTCATCAAATATAAAGGCTTCCAGGTGCCCCCTGCAGAACTTGAAGGACTTCTTGTAAGCCATCCCTCCATTGCAGACGCAGCTGTTGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCCTTCGTTGTGAGATCAAACGGCTTTGATCTAACTGAAGAGGCTGTAAAAGAGTTTGTGGCTAAACAGGTAGTGTTCTACAAAAGACTGCACAAAGTTTATTTTATTCATGCAATTCCCAAGTCTCCATCCGGAAAGATACTAAGAAAAGACCTCAGAGCAAAGCTAGAAGGCTAG 1686 0.5279 MLTVAPSVDAAKEVVVSSPKTDQNHNQTTHVFKSKLPDIPISNHLPLHAYCFEKLSEFAHRPCLIVGPAAKTYTYAETHLISRKIAAGLSNLGICKGDVVMILLQNSAEFVFSFLAASMIGAVATTANPFYTAAEILKQLTVSKAKLIITQAMYVDKLRNHDGANLGEDFKVVTVDDPPENCLHFSVLSEANESEMPEVEIHPENAVAMPFSSGTTGLPKGVVLTHKSLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKDLEEALKNRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVEPETGRSLGYNQPGEICIRGQQIMKGYLNDENSTALTIDAEGWLHTGDVGYVDDDDEIFIVDRVKELIKYKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEEAVKEFVAKQVVFYKRLHKVYFIHAIPKSPSGKILRKDLRAKLEG 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1853 561 Gene3D - 21 459 IPR042099 -
Aed11g1853 561 Pfam AMP-binding enzyme C-terminal domain 474 549 IPR025110 -
Aed11g1853 561 CDD 4CL 41 555 - -
Aed11g1853 561 Pfam AMP-binding enzyme 57 465 IPR000873 -
Aed11g1853 561 ProSitePatterns Putative AMP-binding domain signature. 209 220 IPR020845 -
Aed11g1853 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 558 - -
Aed11g1853 561 Gene3D - 460 560 IPR045851 -
Aed11g1853 561 SUPERFAMILY Acetyl-CoA synthetase-like 38 560 - -
Aed11g1853 561 PANTHER 4-COUMARATE--COA LIGASE 3 30 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1853 Aed-Chr11 21628497 21632715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1853 1 472 Monolignol Biosynthesis Gene Families AT1G65060 68.410 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1853 K01904 - gmx:547930 1003.05