Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1846 ATGGGAACACAACCCCAGCAAACATTTCAGGAGGAAGAGGAGGAGGAGATACCAGGCCGTGGAACTACAATCTCTGGTCAATCAATGTCAACAAGCAGAAGTGTCGGGTCTCCATCCAGCCGGAGTGAGCAGACGATGGCAACTCCTGCTAGTGATAGCACTTTTCTTAGGTTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCTAGCAAAAAGAAAAAGAGGGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTGACCGAATTTGCTGATCCAATCAATGGTGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGCCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTCCCTCGTACTAGTCTAAACGATATTGAAGAGCTAAAGTCGGAGCGTCTTGGGCTAAGGAATAGAATTGAAAAGAAGGCAGCCTATTTGCAAGAGCTGGAGGAGCAATACATAGGTCTTCAGAAACTTATACAACAAAATGAGCAACTATATAGCTCAGGAAATGCTCCCAATGGAGGTGTATCTTTGCCCTTCATTCTGGTGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGATAATTATGTTCTCAAAGCAATGAAATTTTGTGAGAGATCTCAGAATGATAATACAACAGACAATCCTATAGATGGCGGTGAAGGTTCTAGCATATATTCACAGGTTCCTACTTCAGTTTCAAACCCTCCAAATAGACCTCCATCATCTCCACCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAACGAGCATTGA 969 0.4272 MGTQPQQTFQEEEEEEIPGRGTTISGQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVTEFADPINGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKSERLGLRNRIEKKAAYLQELEEQYIGLQKLIQQNEQLYSSGNAPNGGVSLPFILVQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTTDNPIDGGEGSSIYSQVPTSVSNPPNRPPSSPPLPGILKARVKNEH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1846 322 MobiDBLite consensus disorder prediction 21 55 - -
Aed11g1846 322 PIRSF Txn_factor_DP 3 322 IPR015648 GO:0005667|GO:0051726
Aed11g1846 322 Pfam Transcription factor DP 243 280 IPR014889 -
Aed11g1846 322 Pfam Transcription factor DP 181 242 IPR014889 -
Aed11g1846 322 SMART DP_2 180 320 IPR014889 -
Aed11g1846 322 Gene3D - 85 178 IPR036388 -
Aed11g1846 322 SUPERFAMILY E2F-DP heterodimerization region 179 281 IPR037241 -
Aed11g1846 322 Coils Coil 189 223 - -
Aed11g1846 322 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Aed11g1846 322 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Aed11g1846 322 MobiDBLite consensus disorder prediction 273 322 - -
Aed11g1846 322 CDD DP_DD 178 265 IPR014889 -
Aed11g1846 322 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Aed11g1846 322 PANTHER TRANSCRIPTION FACTOR DP 11 322 IPR015648 GO:0005667|GO:0051726
Aed11g1846 322 PANTHER TRANSCRIPTION FACTOR DP 11 322 - -
Aed11g1846 322 Gene3D Transcription factor DP 179 299 IPR038168 -
Aed11g1846 322 MobiDBLite consensus disorder prediction 273 297 - -
Aed11g1846 322 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1846 Aed-Chr11 21587023 21592184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1846 91 273 E2F-DP Transcription Factor Family AT5G02470 49.000 6.02e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aed11g1846 E2F_TDP 1.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1846 K04683 - gmx:100781272 544.273