Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1842 ATGAAGCTGAAGACATATGCGGGTCTTAGTTTCATTGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGCCAGTTTTACCCTGCAATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTCCTCAACACGGGTCTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGGTGTTCCTGGGTTCCCTCCGAGAGGCCGAGGTTGAGAGGCTTAACGAGCAATCCTGGAGGGAGGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAGGACTTCTCTGTCACATTCCTTGCTATGGTCACAGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTTGAGTACATTGAGACCACTCCTTCCGTGCCCATGTTGTCCCATGTTCGAATTGTATCTTTTATGGGCTTCCTTCTTCTTCTCGATAGCCTTTTCTTATACAGTTCTTTGAAGCATTTGATAGAAACGTGGCAGGCTTCCGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACAACAGTGTCAATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTCATTAGGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAGGTCCGTGTTGCAGATTACGTACGATATCGTAAGATCACTTCAAATATGAATGATCGGTTTCCCGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATTTGTCGTGAAGAGATGACGACAGCCAAGAAACTTATATGTGGGCATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCACACTTGCCCAACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGGACAACTGCAGCTGTAGGGCAGCAAGGATCACAGTCAGATGGCCATCAACAGGGAACAACTGGGACAGGCAGTGGAAACACAGCTCAGACTGAGGCTACTGATAGCTTGAGTCGACATCAAGCTAGACTCCAAGCTGCTGCTGCCGCAGCTTCAATATATGAGAAGTCTTATGTGTACCCCTCTGCGAGTTCTTTTGTATGCACTGCTGGATACACTCTTCATTCCCCAGTTCAAGCATCTATTGCCGAGTCTTCAAACACAGACCGTAATGGAGAGCAAGCTTCCAGTGAACAAGCACAAAGGCAGTTTCTTATTGCTGGTAGACCAACAAATGTATCCTTTCCTCCAATGCAACAACTCCATTTTCTACCTTCCCAAGCACATGCATCCCCTGTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATAGAAAACTTATTCAATGCCAGATTCAGATTCTGCAAAACCAGCTCGAGATTCTGCAGAGGACAACAAAGGCTGATAAAAGTGTAGATGAGGGCACGTCATCATCAGATAGCAGAGGCAAGAATGTCATTTCCTCATCATCTGAATCTGGTCCTGGTCGTGGTCATGGTCATGGTCATCGTGAGGAGATTCAAGATGGAAAAGCATAG 1650 0.4412 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNTGLVFMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAAVGQQGSQSDGHQQGTTGTGSGNTAQTEATDSLSRHQARLQAAAAAASIYEKSYVYPSASSFVCTAGYTLHSPVQASIAESSNTDRNGEQASSEQAQRQFLIAGRPTNVSFPPMQQLHFLPSQAHASPVNYGEGFENDPNRKLIQCQIQILQNQLEILQRTTKADKSVDEGTSSSDSRGKNVISSSSESGPGRGHGHGHREEIQDGKA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1842 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Aed11g1842 549 MobiDBLite consensus disorder prediction 503 549 - -
Aed11g1842 549 MobiDBLite consensus disorder prediction 339 376 - -
Aed11g1842 549 MobiDBLite consensus disorder prediction 515 532 - -
Aed11g1842 549 PANTHER - 1 452 - -
Aed11g1842 549 Pfam Ring finger domain 290 329 IPR001841 -
Aed11g1842 549 CDD RING-H2_synoviolin 288 329 - -
Aed11g1842 549 SMART ring_2 291 328 IPR001841 -
Aed11g1842 549 SUPERFAMILY RING/U-box 271 335 - -
Aed11g1842 549 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Aed11g1842 549 Coils Coil 482 502 - -
Aed11g1842 549 MobiDBLite consensus disorder prediction 534 549 - -
Aed11g1842 549 PANTHER RING ZINC FINGER PROTEIN 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1842 Aed-Chr11 21569452 21573487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1842 1 527 C3H Transcription Factor Family AT3G16090 65.348 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1842 K10601 - gmx:100816441 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1842 11 21569452 21573487 Aed11g1842 11 21569452 21573487 ECH