Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1823 ATGGTACTACTTGGTGTTGGTGGTGCATTGATGCTATGCTCCAGAACGCTCGTGCGTTATGTGTTTTTCAAAAGTTGTTTGTTTCGGAATCTTTGTAGTTCAAGTGCAGAACCAGAAACCATTGCCGCAAACATTGATGCACAGATACGCGCTCTTTCCACACGAGGCAACATTGAAGAAGCTCTTTCACTTATTTACACCCACTCCCACTCTTCTCCGTCCCTTCAAACCTATGCCTCTCTGTTCCATGCTTGTGCTCAGAAAAAGTGCCTCCAACATGGCATGGCTCTGCACCATTACATGCTTCACAAAGACCCCGCCATTCAAGATGACCTCTTTCTCACTAATCACATCATAAACATGTACTGTAAGTGTGGCCACTTAGCCCACGCCCGCTACGTGTTTGATCAAATGTCACATAGAAATATTGTTTCTTGGACTGCTCTCATTTCGGGGTATGCCCAGTCTGGCCTAGTCAGAGAGTGTTTCTCTCTCTTCTCTGGCTTGCTGGCTCACTTTCGCCCCAACGAATTTGCTTTTGCAAGTTTGCTTAGCGCGTGTGAGGAGCATGACATTAAGTGTGGCATGCAGGTACATGCAGTTGCTATGAAAATTTCTTTGGATGCCAATGCATATGTTGCGAATGCTCTTATTATAATGTATAGCAAGCGATCTGGTTCCGGTGGAGGTTATGACCAGACACCGGATGATGCGTGGACCGTGTTCAAGTCAATGGAGTTCCCAAATCTTGTGTCTTGGAATTCAATGATTGCAGGTTTTCAACTTTGTGGACTTGGGGACAAAGCCATTCGCCTCTTTGCACATATGTACTGCAATGGAATTGGGTTTGACCGTGCCACACTACTTAGTGTCTTTTCTTCACTGAGTGAATGTGGTGCTTTTGATGATGGTAACATATATCTCTGGAAATGTTTTCAATTGCACTGTCTCACTATTAAAAGTGGTCTTATTTCTGAAATTGAAGTGGTAACTGCATTGATAAAGTCCTATGCAAATCTCGGAGGACATGTTTCCGACTGTTATAGAATCTTCCTTGATACAAGTAGCCAATTGGATATTGTGTCATGGACTGCTCTTATTTCTGTGTTTGCAGAACGGGATCCTGAGCAGGCTTTCCTCCTTTTCTGCCAACTTCATCGCCAAAATTATGTGCCAGACTGGTATACATTCTCTGTTGCTTTAAAAGCTTGCGCATACTTTGTGACTGAGCAACATGCCATGGCTATTCACTCACAAGTAATTAAAAAAGGGTTTCAGGAAGATACTGTTCTTTGTAATGCCTTGATACATGCCTATGCGAGGTGTGGCTCCTTAGCTTTGTCGGAACAAGTATTCAATGAAATGAGCCGCCGTGATTTGGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATACATGGTCAAGCTAAAGATGCACTCGAGCTCTTCCAGCGAATGAATGTTTGTCCAGATTCTGCAACCTTTGTCGCACTTCTCTCAGCTTGCAGTCATGTTGGACTTGTTGACAAAGGAGTGAAATTGTTTAATTCTATGTCTGATGATCATGGCGTTGTTCCACAACTAGATCACTATTCGTGCATGGTTGACCTTTATGGACGAGCTGGGAAGATATTTGAGGCTGAGGAGTTGATATGTAAAATGCCAATGAAACCTGATTCTGTGATTTGGAGTTCATTACTTGGATCTTGCCGGAAGCATGGCAAGACTCGCTTGGCCAAATTGGCGGCTGATAAATTTAAAGAGTTAGATCCAAACAATTCATTGGGATACATACAAATGTCAAACATATATTCCTCTGGCGGTAGTTTTGCAAAAGCTTGCCTGATCAGGAAGGAAATGAGTGACTATAAAGTGAGAAAAGAACCTGGATTAAGCTGGGTTGAGATTGGGAAGCAGGTTCATGAATTTGGCTCTGGTGGTCAATATCATCCAAACAGAGGAGCAATATTAAGCCGGCTTGAGATAGTGATTGGACAATTGAAAGAGATGGGTTATGTGCCAGAGCTTAGCTTAGCCTTGTATGACACGGAAGTGGAGCAGAAAGAAGACCAATTGCTTCATCACAGTGAGAAGATGGCATTGGTATTTGCCATAATGAACGAAGGAAGTTTGCCTTGTGGTGGGAATGTCATTAAAATAATGAAGAATATTCGTATTTGTGTGGATTGCCACAACTTCATGAAATTAGCATCATATCTATTTCAGAAGGAGATTATTGTGAGAGATTCAAACCGTTTTCACCACTTCAAATATGCAACATGCTCTTGTAATGACTACTGGTAA 2304 0.4236 MVLLGVGGALMLCSRTLVRYVFFKSCLFRNLCSSSAEPETIAANIDAQIRALSTRGNIEEALSLIYTHSHSSPSLQTYASLFHACAQKKCLQHGMALHHYMLHKDPAIQDDLFLTNHIINMYCKCGHLAHARYVFDQMSHRNIVSWTALISGYAQSGLVRECFSLFSGLLAHFRPNEFAFASLLSACEEHDIKCGMQVHAVAMKISLDANAYVANALIIMYSKRSGSGGGYDQTPDDAWTVFKSMEFPNLVSWNSMIAGFQLCGLGDKAIRLFAHMYCNGIGFDRATLLSVFSSLSECGAFDDGNIYLWKCFQLHCLTIKSGLISEIEVVTALIKSYANLGGHVSDCYRIFLDTSSQLDIVSWTALISVFAERDPEQAFLLFCQLHRQNYVPDWYTFSVALKACAYFVTEQHAMAIHSQVIKKGFQEDTVLCNALIHAYARCGSLALSEQVFNEMSRRDLVSWNSMLKSYAIHGQAKDALELFQRMNVCPDSATFVALLSACSHVGLVDKGVKLFNSMSDDHGVVPQLDHYSCMVDLYGRAGKIFEAEELICKMPMKPDSVIWSSLLGSCRKHGKTRLAKLAADKFKELDPNNSLGYIQMSNIYSSGGSFAKACLIRKEMSDYKVRKEPGLSWVEIGKQVHEFGSGGQYHPNRGAILSRLEIVIGQLKEMGYVPELSLALYDTEVEQKEDQLLHHSEKMALVFAIMNEGSLPCGGNVIKIMKNIRICVDCHNFMKLASYLFQKEIIVRDSNRFHHFKYATCSCNDYW 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1823 767 Pfam DYW family of nucleic acid deaminases 671 767 IPR032867 GO:0008270
Aed11g1823 767 Pfam PPR repeat family 359 405 IPR002885 -
Aed11g1823 767 Gene3D Tetratricopeptide repeat domain 42 189 IPR011990 GO:0005515
Aed11g1823 767 Gene3D Tetratricopeptide repeat domain 372 498 IPR011990 GO:0005515
Aed11g1823 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Aed11g1823 767 SUPERFAMILY TPR-like 77 614 IPR011990 GO:0005515
Aed11g1823 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 526 IPR002885 -
Aed11g1823 767 Gene3D Tetratricopeptide repeat domain 499 628 IPR011990 GO:0005515
Aed11g1823 767 PANTHER - 35 689 - -
Aed11g1823 767 TIGRFAM PPR: pentatricopeptide repeat domain 144 167 IPR002885 -
Aed11g1823 767 TIGRFAM PPR: pentatricopeptide repeat domain 251 282 IPR002885 -
Aed11g1823 767 TIGRFAM PPR: pentatricopeptide repeat domain 494 526 IPR002885 -
Aed11g1823 767 TIGRFAM PPR: pentatricopeptide repeat domain 531 554 IPR002885 -
Aed11g1823 767 TIGRFAM PPR: pentatricopeptide repeat domain 461 486 IPR002885 -
Aed11g1823 767 TIGRFAM PPR: pentatricopeptide repeat domain 430 461 IPR002885 -
Aed11g1823 767 TIGRFAM PPR: pentatricopeptide repeat domain 116 144 IPR002885 -
Aed11g1823 767 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 35 689 - -
Aed11g1823 767 Pfam E motif 576 635 IPR046848 -
Aed11g1823 767 Gene3D Tetratricopeptide repeat domain 190 315 IPR011990 GO:0005515
Aed11g1823 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Aed11g1823 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Aed11g1823 767 Pfam PPR repeat 116 143 IPR002885 -
Aed11g1823 767 Pfam PPR repeat 494 520 IPR002885 -
Aed11g1823 767 Pfam PPR repeat 430 459 IPR002885 -
Aed11g1823 767 Pfam PPR repeat 530 555 IPR002885 -
Aed11g1823 767 Pfam PPR repeat 144 167 IPR002885 -
Aed11g1823 767 Pfam PPR repeat 251 281 IPR002885 -
Aed11g1823 767 Pfam PPR repeat 461 486 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1823 Aed-Chr11 21443871 21446174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1823 73 767 Glycoside Hydrolase AT3G49170 36.389 9.46e-138 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1823 - - gmx:100799117 1433.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1823 11 21443871 21446174 Aed1g2187 1 18261560 18269757 PCT