Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1809 ATGAGTAGGAGTTCGGCGATGCATGGAACAAGGGACAACAAGAAGCTGAAGGGAGTTCGGCGTCGAAAATGGGGGAAATGGGTGTCGGAGATTCGTGTTCCGGGCACGCAAGAGCGCCTCTGGCTGGGAACCTACGCCACGTCGGAGGCTGCAGCGGTGGCTCACGACGTCGCTGTCTACTGTCTCAGAAGGCCTTCTTCGCTGGACAAACTTAACTTCCCAGAGACCTTGTCTTCCTACTCTCTTGAGCAGCTGAGGGACGTGTCTCCGAGGTCCGTGCAGAAGGTGGCTTCCGATGTTGGGATGGATGTCGATGCCAGAAACATCGCTGCCGATTCCCAAACTGAGAACATAACTGATGATGTTGTTGGATCATCAGATGCGTTTTTGTGGGATAATCATGATCATGCATCTTTTGCAGAAAGGGAGCCCTTGAGCATTTCCATTGAAGATTATCTTTAA 462 0.5173 MSRSSAMHGTRDNKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATSEAAAVAHDVAVYCLRRPSSLDKLNFPETLSSYSLEQLRDVSPRSVQKVASDVGMDVDARNIAADSQTENITDDVVGSSDAFLWDNHDHASFAEREPLSISIEDYL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1809 153 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Aed11g1809 153 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Aed11g1809 153 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Aed11g1809 153 PIRSF PTI6 1 147 IPR017392 GO:0003700
Aed11g1809 153 Gene3D AP2/ERF domain 14 76 IPR036955 GO:0003700|GO:0006355
Aed11g1809 153 ProSiteProfiles AP2/ERF domain profile. 15 74 IPR001471 GO:0003700|GO:0006355
Aed11g1809 153 SMART rav1_2 15 80 IPR001471 GO:0003700|GO:0006355
Aed11g1809 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 8 149 - -
Aed11g1809 153 CDD AP2 14 76 IPR001471 GO:0003700|GO:0006355
Aed11g1809 153 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Aed11g1809 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1809 Aed-Chr11 21370784 21371245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1809 9 153 AP2-EREBP Transcription Factor Family AT1G71520 51.701 1.91e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed11g1809 AP2 5.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1809 - - gmx:100816257 201.06