Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1805 ATGGGGTGCATCTGCTCAAAAACCTATTCATACAAAGACAAAGTTGATGAATATGAGAAAGAAAAAGAAAAAGAGTCAAACATGTCTTCAGTACAACTGGTTGCTCCTGTTGTCTCAACTACTCAGTTAGATGGTGGTAGCAAGGCAAAGTCATCAACGCAAGTGGTTAGAGGGCTTGTCATTGTGCCATCAGAGAATAAAAGCAACCACTTAGATGCAACAAGAAGCCAACACCAGAGGTACATAACAACGAGTGGTGGTGAAGGTGAAAAAAAGCCACTAATGAGTAGAATTCTTAGCATGCAACATTTTGGAGGAGAACATGTTGCTTCTGGATGGCCATTGTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGACAGGCTGACACTTTTGAAAAATTAGACCAAATTGGACAAGGGGCCTATAGCAGTGTGCACAGAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCTTTGAAAAAGGTTCGCTTTTCAAGTACAGATCCAGAAAGTGTTCGGTTCATGGCAAGGGAAATCTATATCTTGCGTCAACTTGACCATCCTAATGTTATGAAGCTCGAGGGTCTTGTCACGTCAAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGATCATGACCTGGCTGGCCTAGCAACTGTACATGGAGTCAAGTTAACTGAACCACAGATAAAATGTTATATGCAACAACTGCTTCGTGGGCTTGAACATTGCCACAGTCGGGGTGTGCTGCACCGCGACATCAAGGGTTCAAATCTTTTGATTGACAACAATGGAAATCTTAAGATTGCAGATTTTGGTCTTTCAACAGTTTATGATCCTGAAAAAAAACAGCCATTGACTAGTCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTACTAGGTGCTACAGATTATGGAGCTGCAATTGATTTGTGGAGTGCTGGTTGCATTCTAGCAGAGCTGCTAGTGGGGAAGCCAATCATGCCTGGAAGAACAGAGGTGGAACAAGTGCACAAAATTTTTAAACTTTGCGGTTCACCATCTGAAGACTATTGGCAGAGAAATAAATTACCCCATGCAACAAGCTTTAAGCCACAACTCCCTTACAACCGCCAAGTTTCCGAAACATTTAAAAACTTTTCTCCCACGGCATTGGCTCTTGTTGATACGCTCCTTTCAATGGAACCAGAAGATCGAAGATCAGCACCTTCCGCACTTGAGAGTGAGTTCTTCACGACAAACCCCTTACCTTGTACTCCCTCAAGTTTACCCAAGTTTTCACCAAGCAAGGTGTTTGATTCCAAGCGTCGAGAAAAGGAAGCTACAAGGAAAAATGTGGAAGCTGTTAAAGGACGTGAACCAGCAACTGTTTTTAGGGGAGCAGGAGACACCAAAGTACTGGGTTCACTAGAGTATAACGCTCGGGGGAATATTTCTATGCGGGGCAAGCCAAACAATACTAGAATATCCCGTTTTAAATATGAAGACCAAGAGAATGGTGAAGCAACCAGAATAAGTGTACACAATGGCTACACACATTCTACTTCATTAATGATGCATAACAGTATGGCAGAACAATCCTCATCGAATAAGAGAACAGATTCATCTTGGAAGAATAATCAAGAATTACAGACACATGTGCATCATGCAGCAGATTTATCTACCTCTTCCATTAAAAAGGAACCGGGCATGTATGTCCGTGAACCTGGGATGGGTTATATGCCGAAGAAAAATAGGATCCACTGCTCTGGACCATTGATGCCTCCGGGTGGCAACATTGATGACATGCTGAAAGAGCACGAGCGATTAATGCAAGATGCTGAGCTGCTTTACCCTAAACCTCAGGCGGAGGAGATGGAGCAGAGACTAGCAAACAGTTGGCGAATGCCTCTTAACGACAAGAAATTCATCGAAAGCGCTCTCCTTTCCGACCTCCGAGTCGACGGCCGTCGCCCCTCCGACTTCCGCAAGCTCACCATCAAGCTTGCCAGGCAAGACGGCGCCGCCGAGGTCCATTTAGGCCAAACCCACGTCATGACCTTCGTCACCGCCCAACTCGTCCGCCCTTACAGAGACCGCCCCAACGAGGGCTCTCTCTCCATCTTCACTGAGTTCTCTCCCATGGCTGATCCCTCCTTCGAGCCCGGCCGCCCCACCGACTCCGCCATCGAGCTTGGCCGCATCGTCGACCGAGGCCTCCGCGATAGCCGTGCTATCGACACCGAATCGCTCTGCGTTCTCTCCGGCAAACTCGTCTGGGCCATCCGCGTCGATATTCACATTCTCGACAATGCTGGAAACCTCGTTGACGCTGCCAATATCTCCGCGTTGGCTTCTCTTTTGACTTTCCGGCGCCCGGAATGCTCGTTGGTCGGTGAAGACGGGCAGGATGTGGTGGTGCATCCTCCCGAGGAGCGCGACCCTATTCCCTTGATTATACATCATCTTCCCATTGCTGTTACCTTTGGATTTTTCAGCAATGAAAATCTCCTCGTGATAGATCCGACGCACCACGAAGAATGTGTGATGACAGGACGCATGACTGCTACGCTTAATTCAAACGGTGAAGTTTGTGCAATTCAAAAGCCTGGTGGTGAGAGTGTCTCTCAGAGCGTTATCATGCACTGCTTGAAACTTGCGCATGTTAAAGCTACTGATATTACAACTAAGATTAGGGATGCTGTTGAAATACACAACAATGAAAGGGCGCTACGGAAGATTAAGCGTCATTCTTCGTCTGTTGCTGTTGCTGTGGATGTATGTGTGGAGAAACAAAATCAATTAGATGGTAGTCATTTGGACAAATTGAAGCTGAAAGAAGAGGATAATTTAATGGAATGTGAAGCCACACCATCAGGACAAGAACAAACTAAGGATGGAGTCTCAAAGAATTTCATCGGTGGTCCCTCGAGTTGTCCATTTATTACTGCCAGAGACCTGCAAATGCAGAGGAATCAGCATGCACTTTATATACAAAAGAGTACTCTAGAGTCTACTCACATGTCTCTGGCATTACAAATTGCTCCAGATCATGTATATAAATCTAAAATGAACTTTAATGAGACTGAAATAGATAAGCAAACAGAGTGA 3117 0.4575 MGCICSKTYSYKDKVDEYEKEKEKESNMSSVQLVAPVVSTTQLDGGSKAKSSTQVVRGLVIVPSENKSNHLDATRSQHQRYITTSGGEGEKKPLMSRILSMQHFGGEHVASGWPLWLSSVAAEAIKGWVPRQADTFEKLDQIGQGAYSSVHRARDLETGKIVALKKVRFSSTDPESVRFMAREIYILRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMDHDLAGLATVHGVKLTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNNGNLKIADFGLSTVYDPEKKQPLTSRVVTLWYRAPELLLGATDYGAAIDLWSAGCILAELLVGKPIMPGRTEVEQVHKIFKLCGSPSEDYWQRNKLPHATSFKPQLPYNRQVSETFKNFSPTALALVDTLLSMEPEDRRSAPSALESEFFTTNPLPCTPSSLPKFSPSKVFDSKRREKEATRKNVEAVKGREPATVFRGAGDTKVLGSLEYNARGNISMRGKPNNTRISRFKYEDQENGEATRISVHNGYTHSTSLMMHNSMAEQSSSNKRTDSSWKNNQELQTHVHHAADLSTSSIKKEPGMYVREPGMGYMPKKNRIHCSGPLMPPGGNIDDMLKEHERLMQDAELLYPKPQAEEMEQRLANSWRMPLNDKKFIESALLSDLRVDGRRPSDFRKLTIKLARQDGAAEVHLGQTHVMTFVTAQLVRPYRDRPNEGSLSIFTEFSPMADPSFEPGRPTDSAIELGRIVDRGLRDSRAIDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANISALASLLTFRRPECSLVGEDGQDVVVHPPEERDPIPLIIHHLPIAVTFGFFSNENLLVIDPTHHEECVMTGRMTATLNSNGEVCAIQKPGGESVSQSVIMHCLKLAHVKATDITTKIRDAVEIHNNERALRKIKRHSSSVAVAVDVCVEKQNQLDGSHLDKLKLKEEDNLMECEATPSGQEQTKDGVSKNFIGGPSSCPFITARDLQMQRNQHALYIQKSTLESTHMSLALQIAPDHVYKSKMNFNETEIDKQTE 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1805 1038 Gene3D - 633 924 IPR027408 -
Aed11g1805 1038 CDD STKc_CDK9_like 136 420 - -
Aed11g1805 1038 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Aed11g1805 1038 MobiDBLite consensus disorder prediction 69 84 - -
Aed11g1805 1038 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1805 1038 PANTHER CELL DIVISION PROTEIN KINASE 80 615 - -
Aed11g1805 1038 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1805 1038 CDD RNase_PH_RRP45 638 897 IPR033100 GO:0000178|GO:0006396
Aed11g1805 1038 SUPERFAMILY Ribosomal protein S5 domain 2-like 638 850 IPR020568 -
Aed11g1805 1038 Gene3D Transferase(Phosphotransferase) domain 1 219 460 - -
Aed11g1805 1038 SUPERFAMILY Ribonuclease PH domain 2-like 820 920 IPR036345 -
Aed11g1805 1038 MobiDBLite consensus disorder prediction 69 88 - -
Aed11g1805 1038 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1805 1038 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 80 615 - -
Aed11g1805 1038 Pfam 3' exoribonuclease family, domain 1 664 795 IPR001247 -
Aed11g1805 1038 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Aed11g1805 1038 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Aed11g1805 1038 SUPERFAMILY Protein kinase-like (PK-like) 130 427 IPR011009 -
Aed11g1805 1038 Pfam 3' exoribonuclease family, domain 2 824 890 IPR015847 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1805 Aed-Chr11 21344461 21349835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1805 128 459 Core Cell Cycle Gene Families AT5G10270 51.585 4.86e-113 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed11g1805 Pkinase 9.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1805 K08819 - gmx:100791743 974.926