Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1801 ATGCAAGGAAGCGCAGCCGACGGAGAAGCCTTGGATTTCGAGCCTGAGGATGATGACTTGATGGACGAGGAAGGTGCTCCCGACGCCGACGCTTCTCCGCCTCACCCTAAGCTCAAATCTGCCATCACCGCCGCAGCCGCCGCCGACACTTCCTCTCTCTCCGCCCCCAAGAAGACCAAGGGTCGCGGATTCCGCCAGGACACCGACGCCAACCGCAACGCTCGCCTCTCCGGCTCCGACTTCGACTCTCTCACCACCGAGGGAGGCCCTGGCCCTCAGAGATCCATTGAGGGATGGATCATTCTGGTCACCGGAGTCCACGAGGAAGCGCAAGAGGACGATTTGCAAAACGCCTTTGGTGAATATGGAGAGATCAAGAACCTGCATTTGAATCTCGATCGCCGCACTGGCTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTGCTGAAGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTCTTACCCAATCCATTTATGTTGACTGGGCCTTCAGCAGTGGACCTATTAATGAGTCAGTCAGAAGAAAGAATGCTAGACCACCTCGTGAACGTCGCTCCAGGAGCCCCCGGAGGAGATATTGA 618 0.5485 MQGSAADGEALDFEPEDDDLMDEEGAPDADASPPHPKLKSAITAAAAADTSSLSAPKKTKGRGFRQDTDANRNARLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQSIYVDWAFSSGPINESVRRKNARPPRERRSRSPRRRY 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1801 205 CDD RRM_RBM8 93 180 IPR033744 GO:0003729
Aed11g1801 205 PANTHER RNA-BINDING PROTEIN 8A 7 205 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aed11g1801 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Aed11g1801 205 MobiDBLite consensus disorder prediction 70 90 - -
Aed11g1801 205 MobiDBLite consensus disorder prediction 191 205 - -
Aed11g1801 205 SMART rrm1_1 100 173 IPR000504 GO:0003723
Aed11g1801 205 Gene3D - 43 191 IPR012677 -
Aed11g1801 205 MobiDBLite consensus disorder prediction 10 26 - -
Aed11g1801 205 PANTHER BNAA05G15240D PROTEIN 7 205 - -
Aed11g1801 205 MobiDBLite consensus disorder prediction 1 95 - -
Aed11g1801 205 PRINTS RNA binding motif protein 8 family signature 53 65 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aed11g1801 205 PRINTS RNA binding motif protein 8 family signature 146 162 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aed11g1801 205 PRINTS RNA binding motif protein 8 family signature 164 176 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aed11g1801 205 PRINTS RNA binding motif protein 8 family signature 90 104 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Aed11g1801 205 MobiDBLite consensus disorder prediction 184 205 - -
Aed11g1801 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 168 IPR000504 GO:0003723
Aed11g1801 205 SUPERFAMILY RNA-binding domain, RBD 92 203 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1801 Aed-Chr11 21327881 21331570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1801 101 175 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.48e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1801 K12876 - gmx:100527187 329.717