Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1787 ATGTTGTGTCTACTAGTGTTGATTATGTTTGTTCTCCCTCTGAGAGGGGAACTAATTTGCGACACCACCGGTAGTACCATGTCATCATGCGGTAAAATCAAAATTCAATTTCCTTTCGGTTTGAAAGAAAGTCGTGGTGGTGGGTGTAGCTATCCGAGATTCCAACTTTCATGCGACAACCTTAACCGAACCATTCTGAGGCTCCCAGGTTCGGGGGATTTGGTGGTTAAAAGCATAAATTACAAGGCCCAGACCTTGAAGGTTAACGACCCCGAAGGTTGTCTCCCAAAACGTTATCTGCACAACAACTTAAGCCTTTCACTGCGCCCACCATTCACGTTTGAAGCAACCGTTTACGACCTTACGTTCCTTCGGTGCCCTTCCAACACAACAGACTCAATTCCGTTCCCACCAATTTCATGCCTCAGCGAATCCAAGTCGTCATGGGTGATATTATCGTGGCCTCTTACACTTAGTCTTAGTGACACGTCGTTACCGTTGCATGATGAGTGTGAGGTGATATCCTCGGCTTTTGTTCCCATTCCAAATCCAGAGACGACGACGACGCCGGATCTAAACGATGATATTGAGTTGAAGTGGAACGAGCCCGCGTGTGGTGAATGTGCTATTCGTGACCAGGTTTGTGGCTTCACCGGAGACACCACGACTCTACAAGTTGGATGCTTCTTCTCTTCTCCAAACCAAAGCCAAGGTCTTTCAAGAAGTGCCAAATATGGCTTAACGATAGGAGTGGGAATACCAGGACTCCTGTGTTTAACTGGGCTTTGCTGCTATATGTGCAGTAAATTCGATGTTTATTCACATGGTCACCGGGCCAGGCCCAGCACCGAGCTTCCGAGGTCCATTACTACCCCACCAGCCTCCTCGTTCATAATGGGCCTTAATGGGCCAGAAATTGAAAATTTCCCCAAGACTCTTATTGGCGACAGTGGACGATTACCAAATTCGAATGACAACACGTGCCCAATATGCCTCTCCGAATACGAGGCCAAGGAGACACTGAGGACCATACCTGCGTGTAACCATTATTTTCATGCACCCTGCATAGATGAGTGGCTCAAGATGAACGCCACGTGCCCCTTATGCAGAAATTCACCGGATGCGTCCTCTTCTATTACTCCTTCTTCATTATCTATCTACTCCTCTTCGTCTTCGCCATAG 1182 0.4755 MLCLLVLIMFVLPLRGELICDTTGSTMSSCGKIKIQFPFGLKESRGGGCSYPRFQLSCDNLNRTILRLPGSGDLVVKSINYKAQTLKVNDPEGCLPKRYLHNNLSLSLRPPFTFEATVYDLTFLRCPSNTTDSIPFPPISCLSESKSSWVILSWPLTLSLSDTSLPLHDECEVISSAFVPIPNPETTTTPDLNDDIELKWNEPACGECAIRDQVCGFTGDTTTLQVGCFFSSPNQSQGLSRSAKYGLTIGVGIPGLLCLTGLCCYMCSKFDVYSHGHRARPSTELPRSITTPPASSFIMGLNGPEIENFPKTLIGDSGRLPNSNDNTCPICLSEYEAKETLRTIPACNHYFHAPCIDEWLKMNATCPLCRNSPDASSSITPSSLSIYSSSSSP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1787 393 Pfam Wall-associated receptor kinase galacturonan-binding 28 90 IPR025287 GO:0030247
Aed11g1787 393 Pfam Ring finger domain 326 370 IPR001841 -
Aed11g1787 393 MobiDBLite consensus disorder prediction 372 393 - -
Aed11g1787 393 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 392 - -
Aed11g1787 393 SUPERFAMILY RING/U-box 322 376 - -
Aed11g1787 393 CDD RING-H2_PA-TM-RING 327 370 - -
Aed11g1787 393 SMART ring_2 328 369 IPR001841 -
Aed11g1787 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 392 - -
Aed11g1787 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 375 IPR013083 -
Aed11g1787 393 ProSiteProfiles Zinc finger RING-type profile. 328 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1787 Aed-Chr11 21227599 21229266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1787 28 373 C3H Transcription Factor Family AT2G46495 34.551 3.45e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1787 - - cam:101497311 362.073