Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1776 ATGTCTACCACCGCAACTACAACGACCTCTGAAGCAGAAGTGAGCAGCAATGAGTGGAAAGTTATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCGGGTCGCGTTCCGGGTCGTAAAGCAGAAGAAATAGAAAGATTCTGGATCATGAGACACGCTGATGCTTTCTCTGCTAAAAGAAACGGAAAGTAA 234 0.4658 MSTTATTTTSEAEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAGRVPGRKAEEIERFWIMRHADAFSAKRNGK 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1776 77 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 73 - -
Aed11g1776 77 SMART sant 20 68 IPR001005 -
Aed11g1776 77 CDD SANT 24 62 IPR001005 -
Aed11g1776 77 Pfam Myb-like DNA-binding domain 25 63 IPR001005 -
Aed11g1776 77 Gene3D - 25 65 - -
Aed11g1776 77 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 6 73 - -
Aed11g1776 77 SUPERFAMILY Homeodomain-like 25 63 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1776 Aed-Chr11 21158200 21159708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1776 24 62 MYB Transcription Factor Family AT5G52600 58.974 1.26e-12 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed11g1776 Myb_DNA-binding 5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1776 K09422 - gmx:100814431 135.576