Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1743 ATGGCTGAGGCTGAGGCGCTGGAGAAGAAAGCGAAGGAAGCATTCTTCGACGACGATTTCACTCTCGCCGTTGATCTCTACTCCGAAGCCATACAATTGGATCCCAACAACGCCAATCTCTTCGCAGACAGAGCCCAAGCCCAGATTAAACTCAAAGCTTTCCCTGAAGCTGTTTCCGATGCGAACAAAGCCATTCAATTAAACCCTTCCTTGTCCAAGGCTTATCTTCGTAAAGGGTTTGCTCTTCAATTCAATCTACGCCCTACTTCTTTCCTTTTATGCTCTCGCCGCTATTTACTTACTTACTTACTTACTTACAGCACCGCTTGTCTCAAACTCGAAGAATATCACACCGCCAAGGTTGCGCTGCAAAGCGGTGCCGCTTTTGCTCCAGACGATTCCAGATTCACCAACTTGATTCAGGAATGTGATCGCTGCATTGCAGGATACACTTTGTTGATATGTCATGTGACAATACATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCTAAAGGAATATCAGCAAAAGACGTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTTACTATTGATGTTCCTGGACAAGATCCCTATCATTATCAACCTCGATTGTTTGGGAAGTATAGTGACAAAAATATGCTGCTTTTCCTTGAGCTTGTGTTTCAATCTGAAAGGCCTGCATACCCATCATCAAAACCAAGGGCAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAGGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAACAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTTTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTAGAAGGCAGTCCTCCAGATGGTATGGAGTTGAAAAAATGGGAGTATTGA 975 0.4318 MAEAEALEKKAKEAFFDDDFTLAVDLYSEAIQLDPNNANLFADRAQAQIKLKAFPEAVSDANKAIQLNPSLSKAYLRKGFALQFNLRPTSFLLCSRRYLLTYLLTYSTACLKLEEYHTAKVALQSGAAFAPDDSRFTNLIQECDRCIAGYTLLICHVTIHEYYQKPEEVVVTIFAKGISAKDVVVDFGEQILSVTIDVPGQDPYHYQPRLFGKYSDKNMLLFLELVFQSERPAYPSSKPRARDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWEY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG 159 213 IPR044563 GO:0051087
Aed11g1743 324 SUPERFAMILY TPR-like 4 84 IPR011990 GO:0005515
Aed11g1743 324 MobiDBLite consensus disorder prediction 304 324 - -
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG A 159 213 - -
Aed11g1743 324 SMART tpr_5 4 37 IPR019734 GO:0005515
Aed11g1743 324 SMART tpr_5 38 71 IPR019734 GO:0005515
Aed11g1743 324 Pfam CS domain 160 206 IPR007052 -
Aed11g1743 324 CDD p23_CS_SGT1_like 161 213 - -
Aed11g1743 324 Gene3D - 159 222 IPR008978 -
Aed11g1743 324 SUPERFAMILY HSP20-like chaperones 157 302 IPR008978 -
Aed11g1743 324 ProSiteProfiles TPR repeat profile. 4 37 IPR019734 GO:0005515
Aed11g1743 324 Pfam SGS domain 242 322 IPR007699 -
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG A 104 149 - -
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG A 4 81 - -
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG A 227 324 - -
Aed11g1743 324 ProSiteProfiles CS domain profile. 155 261 IPR007052 -
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG 104 149 IPR044563 GO:0051087
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG 4 81 IPR044563 GO:0051087
Aed11g1743 324 PANTHER PROTEIN SGT1 HOMOLOG 227 324 IPR044563 GO:0051087
Aed11g1743 324 Gene3D Tetratricopeptide repeat domain 1 86 IPR011990 GO:0005515
Aed11g1743 324 ProSiteProfiles SGS domain profile. 233 324 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1743 Aed-Chr11 20974015 20979449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1743 2 82 U-box Gene Family AT3G07370 37.037 1.34e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1743 K12795 - gmx:100194420 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1743 11 20974015 20979449 Aed11g1743 11 20974015 20979449 ECH
Aed1g2313 1 19171642 19175659 Aed11g1743 11 20974015 20979449 ECH