Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1728 ATGGGATTTCCAGTGGGGTACACAGAGTTGGTGCTACCGAGGGTGTTTGTGCAGCTGCTATCCGTATTGGGATTCATCAGGAGACTCATCACCGTCCTCTTGTGCTACATGGGCTTCGAATCTGACATTAATGCGTGGCCAACGGAGCAAGCGCCCGAATTCCACTCGGTGTTGGCGGTGCTGATCCGAGAAATCCTGCCGGTAGTGAAGTTCTCGGAGATGGCGGTGGAGGACCCGGCTGAGAGCTGCGCGGTGTGTCTGTACGAGTTCGAAGGAGAGGATGAGATCAGACGGCTGACGAACTGCCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGAACTTGTCCCCTTTGTCGGACACCTTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTATGTGCAGCATCAGGGATCCCTCATTTCTATTACAATCATCATGATGACTATTGA 480 0.525 MGFPVGYTELVLPRVFVQLLSVLGFIRRLITVLLCYMGFESDINAWPTEQAPEFHSVLAVLIREILPVVKFSEMAVEDPAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLCAASGIPHFYYNHHDDY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1728 159 Pfam Ring finger domain 82 126 IPR001841 -
Aed11g1728 159 ProSiteProfiles Zinc finger RING-type profile. 83 126 IPR001841 -
Aed11g1728 159 SMART ring_2 83 125 IPR001841 -
Aed11g1728 159 CDD RING-H2 83 126 - -
Aed11g1728 159 PANTHER BRH1 RING FINGER PROTEIN 1 154 - -
Aed11g1728 159 SUPERFAMILY RING/U-box 61 132 - -
Aed11g1728 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 132 IPR013083 -
Aed11g1728 159 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1728 Aed-Chr11 20874449 20874928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1728 1 147 C3H Transcription Factor Family AT1G63840 55.063 1.04e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1728 K16281 - gmx:102665617 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1728 11 20874449 20874928 Aed11g1728 11 20874449 20874928 ECH
Aed11g1728 11 20874449 20874928 Aed5g2304 5 24781324 24781824 PCT