Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1716 ATGGGGAAGGGAAAACCTAGGGCTGTTGAAAAAGGTGTGGTAGGACCTAGTTTGAGTGTTGCATCCTCGACTATACCTTCGGGGCCTGTTTATTACCCCACCGAGGATGAATTCAAGGATCCTTTAGAGTATATTTACAAGATTAGACCCGAGGCTGAGCCTTATGGGATTTGTAAGATTGTGCCTCCCAAGACTTGGAAACCCCCTTTTGCTTTGGATCTAAACTCTTTCACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCTCGCCCTGCCGCCTGTGACTCCAAGACCTTTGACTTGGAATACTCTAGGTTTTTGAGGGATCACTCTGCTAAGAAGTCCAGGAAAAGGGTTGTGTTCGAGGGCCAGGAGCTCGACTTGTGTAAGCTATTCAATGCTGTTAAGCGGTTTGGAGGGTATGACAAGGTTGTTGATGGGAAGAAATGGGGGGATGTTGCCCGCTTTGTGAGGTCCAGTGGGAAGATTTCTGATTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGGGAGCATTTGTATGATTACGAGAATTTCAACAACCAGATGAATCAAGGCACGGCTCAGAGTTGTCAGAGAAGTGTGCATGATGACCACAAGGGTGAGCATGGGGTGCAATCTGTGGCATCCAAGAAGAATCACAAGAGTGTTGATGGTTCAAAACATAAGGATAGTAAAGTGCGAGACGAAGAGCATGATCAGATTTGTGAGCAATGTAAAAGTGGTTTGCATGGGGAACTCATGCTATTGTGTGACAGGTGTGATAAGGGATGGCATACATATTGTCTTTGCCCGCCATTGGAGCAAATTCCTCCGGGAAATTGGTATTGTTTCAACTGCTTGAATTCTGACAGGGACAGTTTTGGTTTTGTGCCTGGGAAGCACTATTCATTGGAAGCTTTTAGACGTATAGCGGATCGTTCAAGGAGGAGATGGTTTGGAGCAGGACCTGTTTCAAGGGTGCAAATAGAGAAGAAATTTTGGGATATTGTGGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTCTATGGGAGTGGTTTCCCACGTGTAACTGATCAGAAACCCCAATTGATTGATGACAAATTATGGGAAGAATACTCAGCTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGCCAGTGCTTTTGAAAAGGAGCCTGGGAATTTTGTTATTACCTTCCCCAGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCCCCTGCTGACTGGCTGCCATATGGTGCTTTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGATAGCAGAGCGTCTTCTTATTTGAAGAAGGAATTGTTGAGAATATCAGATAAAGAAAAATCTTGGAGAGAGAAACTTTGGAAAAATGGTATTATTAAATCTTCTCGCATGGGTCCTCGAAAATGTCCCCAATATGTGGGAACTGAAGAAGATCCAGCATGCATTATATGCCAGCAATATCTCTATCTCTCTGCTGTTGTCTGTGGTTGCAGGCCATCTACTTTTGTTTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTAAACCTACGTCTTCTCTACCGGCATTCACTTGCAGAATTGTATGACTTGGCATTTTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGTGGTGTGAAAAGGCAGCCTTCATGCCTTAGTGCTTTGACCAAAAAGGTGAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTTTGCATGATGCATTTGTTACTGCACTAAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGACATGGTGAAGAATTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGACTGTGTAACAAAAATTGAGTTATGGTTGTGTCATCAGGACTCTAATGGCAAGAAAGTTCATTTAGAATTTGTTGATGAGTTACTGAAATTTAGTCCTGCACCATGCAATGAACCTCGTTATCATAAATTGAAGGACTACGCAGAGGAAGCAAGATTGTTAATTCAGGAGATTGATACTGCTTTGTCAGTGTGTTCAAATATGTCTGAGTTGGAACTTTTGTACTCCAAAGCTTGTGGCTTACCCATCTACGTGAAAGGAAGTAAGAAATTGGAAGGGAAAATTTCTTCAACCAAGTTTGTGGATCTTCAAGTTCAACTCCCAGAGATAGACGTGCTATTGAATCTATTAAGTCAAGTTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTATCAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTCTGATGCTGTTTCCTGGGTTTCTCACTTTAATGATGTCTTAGGGAGAGTTCAGATGCAGGAGGATCATCATAATGCAGTTGGTGAATTGAAGAGCATTTTTGATGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGGGAAAAGGCTGTGAAGGCACATGATGTGAAGATGCCTTTGGAATTCATTCAGCAACTATTGAAGGAGTCCACTATGCTTAAAATTGAGGGAGAGAAGCAATTTGTCAATTTATCTTGTGTGCTTGCTGTTGCCATTCCTTGGGAGGAAAGGGCCAGAGAGATGCTTTCACATGAGGCTCCTATTTCGGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGTTATTCTTCCATCACTTAATGATGTCAAGAATGCATTATCAGAAGCTAATTCATGGTTAAGGAATTCAAAGCCATATTTAGTGTCTACTATGTGTGCTTCAAATTCTGTGCGGAACGTTGAGGACTTGCAGATGTTGGTTTCTCAATCGAAGCATCTTAAAGTATCTTTGGAAGAAAGAGGGATGCTTGATTTTGTTTTGAAGAACTGCAGAATATGGGAATATGAAGCATGTTCTGTACTAGAAGATTCTCAGTGCTTATTTGAACTGGATAACTCTTTGCATGAAACAAACAGTGGTTTAACATGTAAAGTGGAAGATTTGATTGCAAGAATCCAATCTACCATAGCATCCGGTGTATCACTTGGTTTTGACTTCAATGAGATTTCAAAACTCCAAGCCTCTTGTTCTACACTGCAATGGTGCAAAAGAGCCTTGTCTTTCTGCAATTGCTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCCTATGTTTCTGGTGCTCTGTTGAAAGTATTGATTGATGGGTTTGAATGGCTTAGAAAAGCATTAGAGGGGATTTCTGGACCTCGCAATTCTAGAAGATGCAAGTTGACTGACATACAAGATATTCTTACCAATTATCAGACTATTAATATGACCTGTACCGCAGTAAAATGTCAACTTGAAGATGCCATTGGAAAACATAAGTTGTGGCAAGAGCAAGTGTGTCAATTTTTTGGTCTAAGCTCTAGAGAACGTTCTTGGTCTTCAATATTGCAGCTCAAGGAACATGGAGATACCATTGCCTTTAGTTGCTCCGAACTGGATTTGATTTTATTTGAAATTGAGAAGGTGGAAAATTGGAAGAAAAGATGTGTGGATAAATTAGGAATATTGGTCCAAAATGGAAATTCGCTACTTCATGCACTGGAGAAGATAAACCAGACACTTGATAGATCATTGTCTATATACAACAAATTGCAAGATCTGAAGAAACCAAACCTATGTATATGCTGCTATGACAATTCTGAAGATCAGGGATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATGTGCGGTGCATTGGACTAACAGAAAAAGACACAGGCATTGAAAACTACAAGTGCCCTTATTGTGAGATTTTGAGGGGTGATTTCCATTATCAGAATAGAGGTGCCCTCCTGAGGTTTGGGAAGAATCGTGCTGAATTGAAAGTTCTTACTGAACTCAAGTCTGATGCTGAAAATTTCCGTTTATGGATTGATGAAAGAGATTTTTTGAGCCGACTTGTTGAGAAAGCCCTTTCATGCAAATCTTGCTTGAGAGAAATTGTGATCCTTGCATCAGCTAATGTTGATGAAGATATTAGTGTTGTCTCTGAAAAATTGGCCACTGCTGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATATTTGTGACCTTGAGCTGACTTTAGCAAAAAACTTTTGGAAAATTCAAGTCAATAGATTGTTAAATGGTGTACAAAAGCCTGCTCTTCAACAAATTCAAAAGCACCTGAAGGAGGGACTGGCTATGGACATATCACCTGAAGATCACTATATGTTGAAACTTACAAATGTGAATTACTTGGGTTTGCAGTGGGCAGTACTAGCCAAAAAGGTGGCAACTGATTCTGGGGCACTCGGCCTGGATAAAGTTTTTGAACTGGTAGTGGAAGGTGAAAACTTGCCTGTTGATATGAAGGAGGAACTAAGGATATTAAGGGCACGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTATCATTGTAATGAGTGGTATCACTTTGATTGCATGAAATTGCCTTGCACAAGAGATGTCTACATTTGTCCTGCATGTAACCCGTGTACAGAAGGATTGCCTTCAAACCATGACAGAATAACCAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGACGTGCCCAGTCTCACTTGCAACATGTTCGCTACCAGGAGGAATCAAGATAGTGAGTTTAGTGCGAGCCGCGACGCCGGCGCTGTACGAAGAGAGCAAGAGCAGGGTGTCACTGGCACTGGCACTGCCACTCTCTCCGACGCCAACAACAAACAGAAGCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGAGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACCAAATTGCACAACCTCTCAGCGTTCTCGTCAGGAAGAAGACAAATATTCCTTTAATGGCTTCTGATTTTGAGAGCTTGATCTCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGATAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCACTGATCACCTCTGTAAAACTAAAATGCTTGAAGGTGTAAAGTATACATATTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCGATCCAAGACTATGCTAGACAAGTTTGCTGCGGTAGGAATACTTCAGGGGTACCTGGATTATGTCAACAGGAAAATGAAGCTGACAGCAACGGAGTAA 5727 0.4152 MGKGKPRAVEKGVVGPSLSVASSTIPSGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKTWKPPFALDLNSFTFPTKTQAIHKLQARPAACDSKTFDLEYSRFLRDHSAKKSRKRVVFEGQELDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVRSSGKISDCAKHVLCQLYREHLYDYENFNNQMNQGTAQSCQRSVHDDHKGEHGVQSVASKKNHKSVDGSKHKDSKVRDEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLCPPLEQIPPGNWYCFNCLNSDRDSFGFVPGKHYSLEAFRRIADRSRRRWFGAGPVSRVQIEKKFWDIVEGLVGEVEVMYGNDLDTSVYGSGFPRVTDQKPQLIDDKLWEEYSANPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQASAFEKEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDSRASSYLKKELLRISDKEKSWREKLWKNGIIKSSRMGPRKCPQYVGTEEDPACIICQQYLYLSAVVCGCRPSTFVCLEHWEHLCECKTVNLRLLYRHSLAELYDLAFSMDKYTSEDKAECSGVKRQPSCLSALTKKVKGGSITFAQLATEWLLQSSTILQNVFLHDAFVTALRKAEQFLWAGSEMDSVRDMVKNLIEAQKWAEGIRDCVTKIELWLCHQDSNGKKVHLEFVDELLKFSPAPCNEPRYHKLKDYAEEARLLIQEIDTALSVCSNMSELELLYSKACGLPIYVKGSKKLEGKISSTKFVDLQVQLPEIDVLLNLLSQVESCSAQCHDMLEGPMNLKNVGLLLKEWDSLSVDVPELKLLRQYHSDAVSWVSHFNDVLGRVQMQEDHHNAVGELKSIFDEGLSLKIQVDELPLVEIELKKANCREKAVKAHDVKMPLEFIQQLLKESTMLKIEGEKQFVNLSCVLAVAIPWEERAREMLSHEAPISDFEDMIRASENIFVILPSLNDVKNALSEANSWLRNSKPYLVSTMCASNSVRNVEDLQMLVSQSKHLKVSLEERGMLDFVLKNCRIWEYEACSVLEDSQCLFELDNSLHETNSGLTCKVEDLIARIQSTIASGVSLGFDFNEISKLQASCSTLQWCKRALSFCNCSPSLEDVLEVAEGLSHSYVSGALLKVLIDGFEWLRKALEGISGPRNSRRCKLTDIQDILTNYQTINMTCTAVKCQLEDAIGKHKLWQEQVCQFFGLSSRERSWSSILQLKEHGDTIAFSCSELDLILFEIEKVENWKKRCVDKLGILVQNGNSLLHALEKINQTLDRSLSIYNKLQDLKKPNLCICCYDNSEDQGFLTCSTCMDCYHVRCIGLTEKDTGIENYKCPYCEILRGDFHYQNRGALLRFGKNRAELKVLTELKSDAENFRLWIDERDFLSRLVEKALSCKSCLREIVILASANVDEDISVVSEKLATAASKVAIVYDQHDICDLELTLAKNFWKIQVNRLLNGVQKPALQQIQKHLKEGLAMDISPEDHYMLKLTNVNYLGLQWAVLAKKVATDSGALGLDKVFELVVEGENLPVDMKEELRILRARCMLYCICRKPFDPERMIACYHCNEWYHFDCMKLPCTRDVYICPACNPCTEGLPSNHDRITSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNMFATRRNQDSEFSASRDAGAVRREQEQGVTGTGTATLSDANNKQKQRGRLLGLDVGDKYVGLALSDFDNQIAQPLSVLVRKKTNIPLMASDFESLISKYSLKGFVIGIPFDKHQVSSDAMQVKVFTDHLCKTKMLEGVKYTYWNESFTSKNVELLLKPLNLNHPVRSKTMLDKFAAVGILQGYLDYVNRKMKLTATE 1908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1716 1908 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Aed11g1716 1908 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Aed11g1716 1908 CDD ARID 97 185 - -
Aed11g1716 1908 Gene3D Cupin 290 460 - -
Aed11g1716 1908 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 460 - -
Aed11g1716 1908 CDD YqgF 1761 1896 IPR005227 GO:0006364
Aed11g1716 1908 MobiDBLite consensus disorder prediction 1679 1693 - -
Aed11g1716 1908 SUPERFAMILY Clavaminate synthase-like 364 521 - -
Aed11g1716 1908 Pfam Holliday junction resolvase 1760 1896 IPR005227 GO:0006364
Aed11g1716 1908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 289 IPR013083 -
Aed11g1716 1908 Pfam C5HC2 zinc finger 583 634 IPR004198 -
Aed11g1716 1908 Pfam PHD-finger 243 290 IPR019787 -
Aed11g1716 1908 MobiDBLite consensus disorder prediction 1679 1705 - -
Aed11g1716 1908 ProSitePatterns Zinc finger PHD-type signature. 1625 1665 IPR019786 -
Aed11g1716 1908 PANTHER LYSINE-SPECIFIC DEMETHYLASE 461 1081 - -
Aed11g1716 1908 CDD PHD_RSF1 244 288 - -
Aed11g1716 1908 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
Aed11g1716 1908 SMART rnase_8s 1759 1863 IPR006641 GO:0006139
Aed11g1716 1908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1359 1428 IPR013083 -
Aed11g1716 1908 SMART ARID_2 92 185 - -
Aed11g1716 1908 ProSiteProfiles JmjC domain profile. 381 506 IPR003347 -
Aed11g1716 1908 Pfam PLU-1-like protein 872 1100 IPR013637 -
Aed11g1716 1908 Pfam PLU-1-like protein 1070 1325 IPR013637 -
Aed11g1716 1908 Gene3D - 1758 1905 IPR037027 GO:0006139
Aed11g1716 1908 Pfam jmjN domain 29 62 IPR003349 -
Aed11g1716 1908 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Aed11g1716 1908 SMART JmjN_1 27 68 IPR003349 -
Aed11g1716 1908 SUPERFAMILY FYVE/PHD zinc finger 1620 1671 IPR011011 -
Aed11g1716 1908 SUPERFAMILY Ribonuclease H-like 1759 1899 IPR012337 -
Aed11g1716 1908 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Aed11g1716 1908 MobiDBLite consensus disorder prediction 201 237 - -
Aed11g1716 1908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1610 1667 IPR013083 -
Aed11g1716 1908 MobiDBLite consensus disorder prediction 198 237 - -
Aed11g1716 1908 Pfam JmjC domain, hydroxylase 414 460 IPR003347 -
Aed11g1716 1908 SUPERFAMILY FYVE/PHD zinc finger 1367 1416 IPR011011 -
Aed11g1716 1908 Gene3D Cupin 14 132 - -
Aed11g1716 1908 MobiDBLite consensus disorder prediction 1720 1755 - -
Aed11g1716 1908 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 461 1081 - -
Aed11g1716 1908 SMART PHD_3 1624 1666 IPR001965 -
Aed11g1716 1908 SMART PHD_3 1369 1415 IPR001965 -
Aed11g1716 1908 SMART PHD_3 243 289 IPR001965 -
Aed11g1716 1908 Pfam ARID/BRIGHT DNA binding domain 105 185 IPR001606 GO:0003677
Aed11g1716 1908 SMART cupin_9 381 506 IPR003347 -
Aed11g1716 1908 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 25 460 - -
Aed11g1716 1908 Hamap Putative pre-16S rRNA nuclease [yqgF]. 1759 1899 IPR005227 GO:0006364
Aed11g1716 1908 ProSitePatterns Zinc finger PHD-type signature. 1370 1414 IPR019786 -
Aed11g1716 1908 SUPERFAMILY ARID-like 78 200 IPR036431 GO:0003677
Aed11g1716 1908 Gene3D Cupin 461 532 - -
Aed11g1716 1908 SMART bright_3 96 190 IPR001606 GO:0003677
Aed11g1716 1908 MobiDBLite consensus disorder prediction 1738 1755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1716 Aed-Chr11 20779801 20801692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1716 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 2.85e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed11g1716 PLU-1 8.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1716 K11446 - gmx:100789512 3244.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1716 11 20779801 20801692 Aed11g1716 11 20779801 20801692 ECH