Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1715 ATGGATGGGAGAGAAGGCATGGCATTTTCTGGTGGCTCTGCTCCATATTACATGCAGCATAAAGGAGGAGGGGTTAGTGGGTCTGGTCCAGTAACTGGGACACAGAGTGGAGGGTTTCAACCACCCTCTGGGTTTAGAGCTTTGTCCAATGTCTCTCCAGGTTCTACATTTAAAGTAGAGTCTCAGTCTCAGTCTCAGCATGGTAGTTTTAGTCATGGCATTAACATAGGTTCCTCTCCTGATGGTGGAGGTGGAGTAGCTTCTTCTGGTGAGGCTGTGAAAAAGAAAAGAGGGAGGCCAAGGAAGTATGGTCCTGATGGATCTGTTTCATTGATGCTCTCTCCCATGTCTGCCACTGCTAATTCCATTTCCACACCAGGATCAGGCACTTCTTCAGAGAAACGCCCCAGAGGGCGCCCACCTGGAAGTGGGAGGAAGCAACAGCTTGCCTCTTTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCTTTTTCACCTCATGTTATCACCATTGGAGTTGGGGAGGACATTGTAACAAAGTTATTGTCATTTGCACGGCAGAGACCAAGGGCTGTGTGCATCTTAACAGGAACTGGGACAATTTCTTCAGTCACTCTGCGCCAACCCGCTTCTACTAGCGTCAGTGTTACCTATGAGGGGAGATTTCAAATATTATGCTTGTCTGGTTCATATTTGGTTGCTGAAGAAGGTGGACCTCACACTAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATTATCGGTGGTGGTGTTACTAGGCTTATTGCTTCAAGTCCAGTGCAGGTGGTAGCATGCAGTTTCGTGCATGGGGGAACAAAGCCAAAGCCTAAACAAGTGACCACCACTACTACAAAAGAGAGCAGTTCAGAGCCTCAGAGTACTGATAAGTTAGCTTCTCCAGCTAATCAAAACTTCACCTCTTCTTCTTCACCTGCTGTCCCAGGCATTTGGCCAAGGCCAGTAGCAGAGGGGAAAAGTGCACATCCACAACACACTGGTATTGACTTGACGCGTGGGTGA 1053 0.4815 MDGREGMAFSGGSAPYYMQHKGGGVSGSGPVTGTQSGGFQPPSGFRALSNVSPGSTFKVESQSQSQHGSFSHGINIGSSPDGGGGVASSGEAVKKKRGRPRKYGPDGSVSLMLSPMSATANSISTPGSGTSSEKRPRGRPPGSGRKQQLASLGEWMNSSAGLAFSPHVITIGVGEDIVTKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEEGGPHTRTGGMSVSLSSPDGHIIGGGVTRLIASSPVQVVACSFVHGGTKPKPKQVTTTTTKESSSEPQSTDKLASPANQNFTSSSSPAVPGIWPRPVAEGKSAHPQHTGIDLTRG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1715 350 PRINTS AT-hook-like domain signature 132 143 IPR017956 GO:0003677
Aed11g1715 350 PRINTS AT-hook-like domain signature 94 104 IPR017956 GO:0003677
Aed11g1715 350 MobiDBLite consensus disorder prediction 28 76 - -
Aed11g1715 350 CDD DUF296 166 278 IPR005175 -
Aed11g1715 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 166 279 IPR005175 -
Aed11g1715 350 MobiDBLite consensus disorder prediction 282 350 - -
Aed11g1715 350 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Aed11g1715 350 MobiDBLite consensus disorder prediction 286 324 - -
Aed11g1715 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 163 289 - -
Aed11g1715 350 Gene3D - 166 297 - -
Aed11g1715 350 MobiDBLite consensus disorder prediction 1 149 - -
Aed11g1715 350 MobiDBLite consensus disorder prediction 112 132 - -
Aed11g1715 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 350 IPR039605 GO:0003680
Aed11g1715 350 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1715 Aed-Chr11 20774116 20777736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1715 1 350 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.692 3.47e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1715 - - gmx:100790569 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1715 11 20774116 20777736 Aed11g1715 11 20774116 20777736 ECH
Aed11g1715 11 20774116 20777736 Aed5g2275 5 24551946 24557287 PCT