Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1711 ATGGGTAACAATAAGTTGAAGGGTTGGGAGTATTGCATGAGTACTAGTTTGCAGTTGCAGTGCTGTGGGAACCTTTGGCCTGAGCCACACTATCCGTCGGAATTAGAAGGAACAGATTCAGAGGCGGTCAATAAAGTGGTTCTCAGCGTTATGGGAATGACGTGCGCTGCTTGTGCCGGATCCGTTGAGAAAGCCATCAAACGCTTACCCGGGATTCGAGAGGCCGTTGTTGATGTCTTGAACTATAAAGCTCAGGTTCTTTACTACCCACAACTGGTTCACGAGGAGAGGATACGTGAGGCAATAGAAGATGCTGGATTTGAAGCCAAAGTGATGGAAGAAGACTCGAACGACACCAACTCCACTACTCAAATATGCCGAATTCACGTACGAGGCATGACTTGCACTTCTTGCTCCTCCACCATTGAATCATCTCTTCAGTCCCTTCCTGGGGTGCATAAGGCACGAGTCGCCTTAACAACTGAAGAAGCTGAAATCCGCTATGACCCTAACACTGTCACCCACAACCACCTTATCAATGTCATTGAAGAAACCGGGTTCGAAGCCCTACTAATTAGCACAGGGGAACACATTTCCAAGATTGAGCTTCAAATTGATGGCATTAAAAATGATCAATCCCTGAATGTCATCGAACGCTCTCTCCATGCACTTCCAGGTGTTGAAACCATAGACATATATCCAGACATTCACAAAATTGCCATAACTTATAAACCGTACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACAGGCTCAGGGTGTTTTAAAGCAGTGATATTCCCAAACGATGGAGGAAGAGAAGCACAGAGACAGAAGGAAATTAACCGGTACTTCAAGTTATTCATATGGAGTTTGGCTTTCACCATTCCTGTTTTCTTGACATCCATGGTCCTCATGTATATACCTGGAGTTAAACATGTTCTAGATATCAAAGTTGTCAACATGTTGAATATTGGACTTCTCTTGAGGTGTGAATTTGCTACCCCGGTGCAGTTCATCATAGGGAAAAGGTTCTACGTTGGGGCATATAAAGCATTGCGCAAAGGTTCTGCTAACATGGATGTGTTGATAGCCTTAGGGACAAATGCAGCATATTTCTATTCTCTTTACGTTGTGGAAAGAGCTGCTTTCTCACGGGATTTCAAAGGGAGCGATTTCTTTGAGACCAGCTCTATGCTTATTTCGTTTATTCTGTTGGGGAAGTATTTGGAAGTGTTGGCAAAAGGGAAGACATCACAGGCCATTGCAAAGCTTATGAACTTGACACCCGACACGGCAACCTTGTTAGCTCAAGATGATGAGGGAAATGTGGTTGGTGAAAGACAAATTGACAGCCGGTTGATACAAAAGGAGGATGTGATAAAGGTTGTTCCAGGTGCAAAAGTAGCAGCGGATGGTTTTGTGGTATGGGGACAGAGTCATGTAAACGAGAGCATGATAACTGGAGAGGCAAGGCCTGTGGCGAAGAGGAAAGGTGATATGGTGATTGGAGGCACTGTGAACGAGAATGGGGTTTTGCACGTTAAGGTCACTAGGGTTGGATCAGAGACTGCCCTCTCTCAGATTGTTCGACTTGTTGAGTCTGCCCAGATGGCTAAAGCTCCTGTCCAAAAACTTGCTGATCATATTTCTAAATATTTTGTTCCCATGGTCATTGTGCTTTCTCTTTCAACATGGCTTTCATGGTTTCTAGCTGGAAAATTGCATGCATATCCAAAATCTTGGATACCATCTTCCACGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATTTCGGTCATGGTCATTGCCTGCCCTTGTGCTCTTGGCCTAGCCACTCCTACGGCTGTTATGGTTGGTACTGGAGTTGGTGCATCACAAGGTGTGTTGATCAAAGGTGGCCAGGCATTGGAAAATGCACACAAGGTGAATTGCATTGTGTTTGATAAGACAGGGACCCTCACAGTTGGGAAGCCAGTGGTGAACAGCGAACATCCAATAGCCAAGGCAATTGTTGAGCACGCTAAAAAGATCATAGAAGAAGAACAGAATCATCCCTGGCCAGAAGCACACGACTTTGCTTCTGTTTCGGGCCATGGAGTGAAGGCCATTGTTCTAAACAAGGAAATAATGGTTGGGAATAAAAAGATGATGTTGGATCATAACATAGCCATTTCAGCAGATGCTGAAGAAACACTAGCAGAAGCTGAAAGCTTGGCTCAAACTGGGATTCTAGTATCCTTGGATGGAGAAGTCGCTGGTGTTTTGGCTGTGTCTGATCCACTAAAACCTGGTGCCAAAGAAGTAATTTCCATTCTTAATTCCATGAAAATAAAGAGCATGATGGTGACAGGTGATAACTGGGGAACTGCCAACTCCATAGCAAGACAAGTTGGTATTGAAAATGTCATGGCAGAGGCTCAACCTGAGACTAAAGCGACCAAAATAAAAGAATTGCAGAGTTGTGGGAAGACGGTGGCAATGGTGGGAGATGGCATAAACGATTCACCGGCACTGGTGGCAGCAGATGTTGGAATGGCAATTGGTGCTGGCACAGACATAGCTATTGAGGCAGCTGACATAGTTCTGATGAAGAGCAACTTGGAGGATATAATAATAGCAATTGACCTAGCTCAAAAAACATTCAATCGTATACGTCTAAACTACATTTGGGCAATGGGTTACAATCTGCTAGCTATCCCAATTGCCGCCGGTGTCCTTTACTCCTCCACTAGATTCCGATTACCACCGTGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTCTCAGTGTTGTTTGCTCATCCCTCTTGTTAAAAAATTACAAGAGACCTACCACGCTAAACACCTTCCAGATAAATGCTATCAAGATTGAATAA 2886 0.4453 MGNNKLKGWEYCMSTSLQLQCCGNLWPEPHYPSELEGTDSEAVNKVVLSVMGMTCAACAGSVEKAIKRLPGIREAVVDVLNYKAQVLYYPQLVHEERIREAIEDAGFEAKVMEEDSNDTNSTTQICRIHVRGMTCTSCSSTIESSLQSLPGVHKARVALTTEEAEIRYDPNTVTHNHLINVIEETGFEALLISTGEHISKIELQIDGIKNDQSLNVIERSLHALPGVETIDIYPDIHKIAITYKPYMTGPRTFIEVIESTGSGCFKAVIFPNDGGREAQRQKEINRYFKLFIWSLAFTIPVFLTSMVLMYIPGVKHVLDIKVVNMLNIGLLLRCEFATPVQFIIGKRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERAAFSRDFKGSDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPDTATLLAQDDEGNVVGERQIDSRLIQKEDVIKVVPGAKVAADGFVVWGQSHVNESMITGEARPVAKRKGDMVIGGTVNENGVLHVKVTRVGSETALSQIVRLVESAQMAKAPVQKLADHISKYFVPMVIVLSLSTWLSWFLAGKLHAYPKSWIPSSTNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALENAHKVNCIVFDKTGTLTVGKPVVNSEHPIAKAIVEHAKKIIEEEQNHPWPEAHDFASVSGHGVKAIVLNKEIMVGNKKMMLDHNIAISADAEETLAEAESLAQTGILVSLDGEVAGVLAVSDPLKPGAKEVISILNSMKIKSMMVTGDNWGTANSIARQVGIENVMAEAQPETKATKIKELQSCGKTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAQKTFNRIRLNYIWAMGYNLLAIPIAAGVLYSSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPTTLNTFQINAIKIE 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1711 961 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Aed11g1711 961 SUPERFAMILY HMA, heavy metal-associated domain 43 115 IPR036163 GO:0046872
Aed11g1711 961 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 32 664 - -
Aed11g1711 961 Gene3D - 38 115 - -
Aed11g1711 961 Gene3D - 195 269 - -
Aed11g1711 961 Pfam E1-E2 ATPase 431 628 - -
Aed11g1711 961 CDD P-type_ATPase_Cu-like 291 928 - -
Aed11g1711 961 PRINTS P-type cation-transporting ATPase superfamily signature 650 664 - -
Aed11g1711 961 PRINTS P-type cation-transporting ATPase superfamily signature 757 768 - -
Aed11g1711 961 PRINTS P-type cation-transporting ATPase superfamily signature 855 867 - -
Aed11g1711 961 PRINTS P-type cation-transporting ATPase superfamily signature 779 789 - -
Aed11g1711 961 PRINTS P-type cation-transporting ATPase superfamily signature 832 851 - -
Aed11g1711 961 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Aed11g1711 961 SUPERFAMILY HMA, heavy metal-associated domain 121 196 IPR036163 GO:0046872
Aed11g1711 961 Pfam haloacid dehalogenase-like hydrolase 646 846 - -
Aed11g1711 961 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Aed11g1711 961 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Aed11g1711 961 PRINTS Copper-transporting ATPase 1 signature 148 169 - -
Aed11g1711 961 CDD HMA 130 189 IPR006121 GO:0046872
Aed11g1711 961 SUPERFAMILY HAD-like 649 938 IPR036412 -
Aed11g1711 961 PANTHER ATP7, ISOFORM B 32 664 - -
Aed11g1711 961 ProSiteProfiles Heavy-metal-associated domain profile. 200 261 IPR006121 GO:0046872
Aed11g1711 961 ProSitePatterns E1-E2 ATPases phosphorylation site. 652 658 IPR018303 -
Aed11g1711 961 Gene3D - 418 540 - -
Aed11g1711 961 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 914 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed11g1711 961 Pfam Heavy-metal-associated domain 128 188 IPR006121 GO:0046872
Aed11g1711 961 Pfam Heavy-metal-associated domain 48 108 IPR006121 GO:0046872
Aed11g1711 961 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Aed11g1711 961 Gene3D - 660 763 IPR023299 GO:0000166
Aed11g1711 961 ProSitePatterns Heavy-metal-associated domain. 50 79 IPR017969 GO:0046872
Aed11g1711 961 PANTHER ATP7, ISOFORM B 664 952 - -
Aed11g1711 961 TIGRFAM TIGR00003: copper ion binding protein 45 109 IPR006122 GO:0005507
Aed11g1711 961 TIGRFAM TIGR00003: copper ion binding protein 128 189 IPR006122 GO:0005507
Aed11g1711 961 SUPERFAMILY Calcium ATPase, transmembrane domain M 401 642 IPR023298 -
Aed11g1711 961 CDD HMA 47 110 IPR006121 GO:0046872
Aed11g1711 961 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 664 952 - -
Aed11g1711 961 Gene3D - 617 889 IPR023214 -
Aed11g1711 961 SUPERFAMILY HMA, heavy metal-associated domain 196 264 IPR036163 GO:0046872
Aed11g1711 961 Gene3D - 123 194 - -
Aed11g1711 961 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Aed11g1711 961 SUPERFAMILY Calcium ATPase, transduction domain A 451 536 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1711 Aed-Chr11 20741491 20747685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1711 41 961 Primary Pumps ATPases AT1G63440 71.308 0.0 1389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1711 K17686 - gmx:100817431 1639.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1711 11 20741491 20747685 Aed11g1711 11 20741491 20747685 ECH