Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1710 ATGGCGAAGCTGTTAGCGTTAAGTTGTTGGCGAAACCTGTCGCCGCGACCTCACTACCCGTCGATGCCGAAATACCCGAAGGGACAGGGTGCCGCGACGGTGGACGAGCTCTCAGAGTCCACCGCTCTTTTCTCCGTCGTGGGAATGAGCTGCGCCGCCTGCGCGGGATCCGTGGAAAAGGCCGTGAAACGCCTCCCCGGGATCGGCGAAGCCATCGTGGACGTCCTCAACAACCGCGCCCACGTCATCTTCTACCCGGCCTTCGTTAACGAGGAGACAATTGGCGAGGCCATTGAAGACGCTGGTTTCGAAGCCGCGTTACTCACAGACGACACATCCGTTCAAGTGTGCCGTATCCAGATCAAAGGAATGACCTGCACCTCCTGTTCATCCACTCTCGAATCCCTTTTGCAAGCCCATCACGGCGTCTTCCAGGCCCGCGTGGGCCTCGCCACTGAAGAGGCCCAACTCCACTACAATCCAAACCTCCTCACCACCGACCAAATTCTACAAGCTATACAAGATTCCGGATTCCAAGCCCAGCTCATTAGTTCAAGCGAAGACTTAAGCAAGATAGACCTCCAAGTGGAAGCTGCAGTATCCAACGACGACTCCGGCTCCATCAAACTAATACAAGATTCTCTGCGGACGCTCCCAGGAGTTCTTGCGGTGGACATAACAACGGAACTAAACAAAGTATCGGTTTCTTACAAACCGGACGTCACAGGACCCAGAAATTTCATCAACGCGATTCATGAAACAGGGAATGGGAATTTCAAGGCTAAGATATATCCTACAGAAGAAGGACACAGAGATTCTCACAGACGCCGGGAAATTAAACAGTACTATAAATCTTTCTTGTGGAGCTTGGTCTTTACTATTCCTGTGTTTCTACTCTCCATGGTGTTTATGTATGTTCCTGGAATTAAGGACGCGCTCGATGCCAAAATTGTCAACATGCTTACCGTTGGGGAGGTTGCGCGTTGGGTGCTTTCCACGCCGGTTCAGTTCGTTCTCGGGTGGCGCTTTTACTATGGTTCCTATAAGGCATTGCGTCGTGGCTCTGCCAACATGGATGTTCTCATTGCGTTGGGAACAAACACTGCCTATTTTTACTCTGTCTACTCTGTTTTAAGAGCTGCTACCTCTCCACATTTCGAGGGCAATGATTTCTTTGAAACAAGTGCGATGCTTATTTCCTTCATTCTGCTTGGGAAGTATCTTGAGATTTTGGCCAAGGGGAAGACTTCTGATGCTATTGCCAAGCTCATGAACTTGACACCGGACACTGCGGTTTTGTTGACTCTGGACCCCGGTGATGGAAACGTTGTTGGGGAGGAGGAGATTGATAGCAGGCTGGTTCAGAAGAACGATGTGATCAAGGTTGTTCCTGGGGCGAAGGTGGCTTCGGATGGTTTTGTTGTTTGGGGGCAGAGTCACGTGAATGAGAGCATGATTACGGGGGAGGCGCGACCTGTGGCCAAGAGGAAAGGAGACACTGTTATTGGAGGGACTCTGAATGAGAATGGAGTTTTGCATGTTAAGGCAACAAAGGTGGGATCGGAGAGTGCTCTTTCACAGATTGTTCGCCTTGTTGAGTCTGCTCAGATGGCTAAAGCTCCTGTTCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGGTGATTGTGATCTCGTTCACTACTTGGCTTGTGTGGTTTTTGGCTGGAAAATTCCATGCTTACCCCAAGTCTTGGATACCGTCTTCTATGGACAGCTTTCAGCTTGCTCTGCAGTTTGGAATATCGGTCATGGTCATAGCCTGCCCTTGTGCTTTGGGTTTAGCCACACCAACTGCTGTTATGGTTGGGACTGGAGTTGGTGCATCTCAGGGTGTGCTCATCAAAGGAGGCCAAGCATTAGAGAGTGCACATAAGGTGAACTGCATTGTTTTTGATAAGACGGGTACTCTCACTGTTGGGAAACCAGTGTTGGTGAGAACAGAAATATTGACAAAAATGGTGCTCCAGGAATTCTATGAACTTGTGGCTGCAGCTGAGGTGAACAGTGAGCATCCGCTGGCCAAGGCCATCGTTGAGTATGCTAAAAAGTTTAGAGACGAAGAGAACCCTTGTTGGCCAGAAGCAAGAGACTTTGTTTCCATTACAGGACATGGAGTAAAGGCCACTGTTCATAACAAGGAAATAATTGTGGGTAATAAGAGCTTGTTGGCTGACCATAACATTGCAATTCCTGATGCTGCTGAAGATATACTTGCTGAAGCCGAAAAGATGGCTCAAACAGGAATTGTAGTATCTATAAATGGGAAAGTAGCTGGGGTTTTAGCAGTATCCGATCCATTGAAACCAGGTGCTCAAGAAGTCATTTCCATCCTCAAGTCCATGAAAATCAAGAGCATCATGGTGACTGGGGACAACTTGGGAACTGCTAGTTCTATCGCGAGGGAAGTAGGAATTGAAAATGTTATTGCTGAGGCCAAACCGGATCAAAAAGCAGAGAAAGTGAAAGACTTGCAGGCTTCTGGGTACACTGTGGCTATGGTGGGGGATGGTATAAATGATTCACCTGCACTAGTGGCAGCGGATGTGGGAATGGCAATAGGAGCTGGTACAGACATTGCTATTGAGGCTGCTGATATTGTCCTGATGAAGAGCAACTTGGAGGATGTAATAACAGCCATTGACCTTTCAAGAAAAACATTTTCCCGCATAAGGCTGAATTACTTTTGGGCATTGGGTTATAACTTGCTTGGCATCCCAATTGCTGCTGGAGCTCTTTTCCCTTCTACAAGGTTCAGATTGCCACCCTGGATTGCTGGGGCTGCTATGGCTGCCTCCTCTGTCAGCGTTGTTTGCTGTTCTCTGTTGCTTAAATATTACAGGAGACCCAAGAAGCTAGACAACCTTGAAATACGAACCATAAGGGTCGAGTCATCCACTGATATCATGCATCACGATTCATGA 2970 0.4828 MAKLLALSCWRNLSPRPHYPSMPKYPKGQGAATVDELSESTALFSVVGMSCAACAGSVEKAVKRLPGIGEAIVDVLNNRAHVIFYPAFVNEETIGEAIEDAGFEAALLTDDTSVQVCRIQIKGMTCTSCSSTLESLLQAHHGVFQARVGLATEEAQLHYNPNLLTTDQILQAIQDSGFQAQLISSSEDLSKIDLQVEAAVSNDDSGSIKLIQDSLRTLPGVLAVDITTELNKVSVSYKPDVTGPRNFINAIHETGNGNFKAKIYPTEEGHRDSHRRREIKQYYKSFLWSLVFTIPVFLLSMVFMYVPGIKDALDAKIVNMLTVGEVARWVLSTPVQFVLGWRFYYGSYKALRRGSANMDVLIALGTNTAYFYSVYSVLRAATSPHFEGNDFFETSAMLISFILLGKYLEILAKGKTSDAIAKLMNLTPDTAVLLTLDPGDGNVVGEEEIDSRLVQKNDVIKVVPGAKVASDGFVVWGQSHVNESMITGEARPVAKRKGDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVIVISFTTWLVWFLAGKFHAYPKSWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVLVRTEILTKMVLQEFYELVAAAEVNSEHPLAKAIVEYAKKFRDEENPCWPEARDFVSITGHGVKATVHNKEIIVGNKSLLADHNIAIPDAAEDILAEAEKMAQTGIVVSINGKVAGVLAVSDPLKPGAQEVISILKSMKIKSIMVTGDNLGTASSIAREVGIENVIAEAKPDQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYFWALGYNLLGIPIAAGALFPSTRFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRTIRVESSTDIMHHDS 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1710 989 CDD HMA 119 180 IPR006121 GO:0046872
Aed11g1710 989 PANTHER ATP7, ISOFORM B 12 970 - -
Aed11g1710 989 TIGRFAM TIGR00003: copper ion binding protein 44 105 IPR006122 GO:0005507
Aed11g1710 989 PRINTS P-type cation-transporting ATPase superfamily signature 775 786 - -
Aed11g1710 989 PRINTS P-type cation-transporting ATPase superfamily signature 797 807 - -
Aed11g1710 989 PRINTS P-type cation-transporting ATPase superfamily signature 850 869 - -
Aed11g1710 989 PRINTS P-type cation-transporting ATPase superfamily signature 873 885 - -
Aed11g1710 989 PRINTS P-type cation-transporting ATPase superfamily signature 646 660 - -
Aed11g1710 989 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Aed11g1710 989 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 12 970 - -
Aed11g1710 989 SUPERFAMILY HAD-like 645 956 IPR036412 -
Aed11g1710 989 Pfam haloacid dehalogenase-like hydrolase 642 864 - -
Aed11g1710 989 CDD HMA 44 106 IPR006121 GO:0046872
Aed11g1710 989 Gene3D - 203 255 - -
Aed11g1710 989 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 398 932 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed11g1710 989 Gene3D - 413 536 - -
Aed11g1710 989 ProSiteProfiles Heavy-metal-associated domain profile. 116 182 IPR006121 GO:0046872
Aed11g1710 989 CDD HMA 211 255 IPR006121 GO:0046872
Aed11g1710 989 SUPERFAMILY Calcium ATPase, transduction domain A 446 532 IPR008250 -
Aed11g1710 989 SUPERFAMILY Calcium ATPase, transmembrane domain M 390 921 IPR023298 -
Aed11g1710 989 SFLD p-type atpase 628 902 IPR044492 -
Aed11g1710 989 SUPERFAMILY HMA, heavy metal-associated domain 40 110 IPR036163 GO:0046872
Aed11g1710 989 CDD P-type_ATPase_Cu-like 284 960 - -
Aed11g1710 989 SUPERFAMILY HMA, heavy metal-associated domain 205 257 IPR036163 GO:0046872
Aed11g1710 989 ProSitePatterns E1-E2 ATPases phosphorylation site. 648 654 IPR018303 -
Aed11g1710 989 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Aed11g1710 989 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Aed11g1710 989 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Aed11g1710 989 PRINTS Copper-transporting ATPase 1 signature 139 160 - -
Aed11g1710 989 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Aed11g1710 989 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 358 959 IPR027256 GO:0006812|GO:0016021|GO:0019829
Aed11g1710 989 Gene3D - 731 781 IPR023299 GO:0000166
Aed11g1710 989 Gene3D - 653 730 IPR023299 GO:0000166
Aed11g1710 989 SFLD Haloacid Dehalogenase 628 902 - -
Aed11g1710 989 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Aed11g1710 989 Pfam E1-E2 ATPase 445 624 - -
Aed11g1710 989 Gene3D - 114 184 - -
Aed11g1710 989 SUPERFAMILY HMA, heavy metal-associated domain 113 185 IPR036163 GO:0046872
Aed11g1710 989 ProSitePatterns Heavy-metal-associated domain. 121 150 IPR017969 GO:0046872
Aed11g1710 989 Gene3D - 35 107 - -
Aed11g1710 989 Gene3D - 613 907 IPR023214 -
Aed11g1710 989 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Aed11g1710 989 Pfam Heavy-metal-associated domain 119 178 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1710 Aed-Chr11 20732245 20736304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1710 3 979 Primary Pumps ATPases AT1G63440 73.843 0.0 1493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1710 K17686 - gmx:100816893 1735.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1710 11 20732245 20736304 Aed11g1710 11 20732245 20736304 ECH
Aed11g1710 11 20732245 20736304 Aed5g2270 5 24536954 24540230 PCT