Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1668 ATGAGAAGACACCGTCAAATTCATCTCTCTCATGCTCTATTGTGCACTGTTTTCTGTTTGCTTGTGACAGCTTCTGCAGCAGCAACTGAGAAGGAAGTTTTGCTTGAATTCAAGGGTAACATCACGGACGATCCACGCGCCAGCTTGAGTTCGTGGACTTCAAGTGGAAACCCGTGCCATGATTTCAAGGGTGTTTGGTGTAACTCTGAAGGGTTTGTAGAGAGAATTGTGCTTTGGAACACTAGCTTGGGAGGGGTGTTGTCCTCGTCACTTTCGGGGTTGACGAGATTGAGGATATTGACGTTGTTCGGGAACCGTTTCTCAGGTGGTATTCCAGAAGGTTATGGTGATCTTCACTCGCTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCGATCCCTGAGTTCATTGGTGATTTGCCTAGCATTCGCTTTCTAGATTTATCCAAGAATGGCTTCACTGGGGAGATACCTTCTGCTTTGTTTAGGTACTGCTACAAAACCAAGTTCGTTTCTTTTTCTCATAACAACCTTGCCGGTTCAATTCCTGCCTCCTTGGTGAATTGCTCCAACCTTGAAGGCTTTGATTTTTCCTTCAACAACCTTAGTGGGGTTGTCCCTCCGCGGCTTTGTGACATTCCAAGGTTGTCATATGTGTCGCTTAGAAGCAATGCCTTGTCAGGGAGCGTGCAGGGGCTCATTTCCTCATGCCAAAGTTTGGTACATTTGGATTTTGGTAGCAATAGATTCACTGATTTGGCTCCATTCCTCGTCCTTGAAATGCAAAATCTTACCTATCTCAATCTATCGTATAATGGATTTGAAGGACATATTCCTGAGATCAGTGGCTGTAGTGGGAGATTGGAAATCTTCGATGCTTCGGGGAATTCTTTGGATGGGGAGATTCCATCCAGCATAACTAAATGCAAGAGCCTGAAGCTATTGGCGTTGGAGTTGAATAGGCTGGAGGGGAATATCCCACTGGATATTCAGGAATTGCGGGGACTAATAGTTATCAAATTGGGTAATAATTCCATTGCTGGAACGATTCCCAAGGGCTTTGGCAACGTTGAGCTGCTTGAATTGCTGGATTTGCAGAATCTAAACCTCGTTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGATGTTTCTGGTAATAAATTAGAAGGAAACAGAAACGGAACTGGATCATCTTCAGCTCCTGGGAAGTCTAAAGTTCTTAGCACCTCAGCAATTGTTGCAATTGTTGCTGCAGCTGTAATTCTTGCTGGGGTTTGTTTGGTGACCATCATGAATATGAGGGCACGTGGTAGAAGAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCTTGGATCAACAGAGTCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGCTTACCATCAAAATATGAAGATTGGGAGGCAGGTACTAAAGCATTGCTTGACAAAGAATCTTTGATAGGCGGTGGATCGATTGGTACAGTCTACCGAACTGATTTTGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTCTGGGAAGGCTCAGAAACCAGGAGGAATTCGAGCATGAAATTGGGCGACTAGGTAACCTTCAACACCCTCACTTAGTTGCTTTTCAAGGTTACTATTGGTCATCTTCAATGCAGTTGATTCTATCAGAGTTTATCCCAAATGGAAATCTAAATTTACTGGGATTTGCTGAGAACGAATTAATTCAGGTTATGAGATTGGGGCTAATTTGTACTTCGGAGGATCCTTCAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGCATTTGTTTATTCCGTTACTTTGCGTGTTTTCAAGGGGAATACAAAAGATGCCTATGATTCATTTCCAACTTTTTCTCTTTTGGATTCCATAAATGTCATGAGATCATGTCTAGGGAAGTTGCTATCAACATTAAATTTGTTCCATCCTCGTGAAGGGAGCACCCCTGATGATAAAAGTAATAAATACAATAGGACCCTCCAGCTGAAATATACAAAGCTTGAAGGATATAATCAACTATGTGCATTTGTTGTGGCATCAGCAATTCTCCGAATCCGTTCCATCAGTACAGAAACATCCTTTTCAGTGGATGTAGCAAAACAAAAACGAAACCATCCAGGTTCAATACAGTGA 2193 0.4264 MRRHRQIHLSHALLCTVFCLLVTASAAATEKEVLLEFKGNITDDPRASLSSWTSSGNPCHDFKGVWCNSEGFVERIVLWNTSLGGVLSSSLSGLTRLRILTLFGNRFSGGIPEGYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSALFRYCYKTKFVSFSHNNLAGSIPASLVNCSNLEGFDFSFNNLSGVVPPRLCDIPRLSYVSLRSNALSGSVQGLISSCQSLVHLDFGSNRFTDLAPFLVLEMQNLTYLNLSYNGFEGHIPEISGCSGRLEIFDASGNSLDGEIPSSITKCKSLKLLALELNRLEGNIPLDIQELRGLIVIKLGNNSIAGTIPKGFGNVELLELLDLQNLNLVGQIPDDISNCKFLLGLDVSGNKLEGNRNGTGSSSAPGKSKVLSTSAIVAIVAAAVILAGVCLVTIMNMRARGRRKDDDQIMIVESTPLGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETLGRLRNQEEFEHEIGRLGNLQHPHLVAFQGYYWSSSMQLILSEFIPNGNLNLLGFAENELIQVMRLGLICTSEDPSRRPSMAEVVQAFVYSVTLRVFKGNTKDAYDSFPTFSLLDSINVMRSCLGKLLSTLNLFHPREGSTPDDKSNKYNRTLQLKYTKLEGYNQLCAFVVASAILRIRSISTETSFSVDVAKQKRNHPGSIQ 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1668 730 Pfam Protein tyrosine and serine/threonine kinase 498 578 IPR001245 GO:0004672|GO:0006468
Aed11g1668 730 ProSiteProfiles Protein kinase domain profile. 495 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed11g1668 730 Pfam Leucine rich repeat 96 154 IPR001611 GO:0005515
Aed11g1668 730 Gene3D Transferase(Phosphotransferase) domain 1 482 587 - -
Aed11g1668 730 ProSiteProfiles Leucine-rich repeat profile. 265 287 IPR001611 GO:0005515
Aed11g1668 730 PANTHER - 578 614 - -
Aed11g1668 730 SUPERFAMILY L domain-like 45 397 - -
Aed11g1668 730 PANTHER UNNAMED PRODUCT 407 577 - -
Aed11g1668 730 PANTHER UNNAMED PRODUCT 23 399 - -
Aed11g1668 730 Gene3D Ribonuclease Inhibitor 26 165 IPR032675 -
Aed11g1668 730 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Aed11g1668 730 SUPERFAMILY Protein kinase-like (PK-like) 495 579 IPR011009 -
Aed11g1668 730 PANTHER - 23 399 - -
Aed11g1668 730 PANTHER - 407 577 - -
Aed11g1668 730 PANTHER UNNAMED PRODUCT 578 614 - -
Aed11g1668 730 Gene3D Ribonuclease Inhibitor 166 413 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1668 Aed-Chr11 20477430 20482387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1668 579 615 Receptor kinase-like Gene Family AT1G62950 72.973 4.66e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Aed11g1668 PK_Tyr_Ser-Thr 1.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1668 - - gmx:100805681 685.641