Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1653 ATGTCGTCAAACTTAGGGTTAAGGAATGGTCGACGAAAGGTTGAGATGAAGAAGATGACAAACGAAAGCAACCTCCAAGTGACATTCTCAAAACGACGCAGTGGGGTTTTCAAAAAAGCTAGTGAGCTTTGCACCCTTTGTGGCGCTGAGGTTTGTCTTATCATCTTTTCACCAAGTGGAAAGGTCTTCTCTTTTGGTCATCCCAATGCTGACACAGTGTTCATGGCAGTCAATAACCTGCAACTGTATGAACTCAACGCGCAACTCACAAAGTTCACCACCCAACTTGAAACTGAGAAGAAGCGTGGTTGTGAGCTGAAACGATTGCATAAGGTCGTTCAAACTCAATGGTGGTGGGCAACTCCTACTAATGACATGACCACTTCGCAATTGAACAATTTTAAGGGGGCTTTGCAACAAATGAAGATTAACGTCACTCGCAAATCTGAAATGCTTCTCATTCATAATGCTATTAACCTACCGCCATCATCGATGAATAATCATGGATTGGGAGAACATGCTCCTAACAATGGTTTTTATTGA 543 0.4254 MSSNLGLRNGRRKVEMKKMTNESNLQVTFSKRRSGVFKKASELCTLCGAEVCLIIFSPSGKVFSFGHPNADTVFMAVNNLQLYELNAQLTKFTTQLETEKKRGCELKRLHKVVQTQWWWATPTNDMTTSQLNNFKGALQQMKINVTRKSEMLLIHNAINLPPSSMNNHGLGEHAPNNGFY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1653 180 PANTHER MADS BOX PROTEIN 8 71 - -
Aed11g1653 180 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Aed11g1653 180 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Aed11g1653 180 CDD MADS 10 68 - -
Aed11g1653 180 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Aed11g1653 180 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Aed11g1653 180 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Aed11g1653 180 SUPERFAMILY SRF-like 10 92 IPR036879 GO:0003677|GO:0046983
Aed11g1653 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 71 - -
Aed11g1653 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 74 160 - -
Aed11g1653 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Aed11g1653 180 Gene3D - 21 91 IPR036879 GO:0003677|GO:0046983
Aed11g1653 180 PANTHER MADS BOX PROTEIN 74 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1653 Aed-Chr11 20377032 20377611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1653 10 171 Type I MADS-box Gene Family AT5G60440 48.913 3.30e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed11g1653 SRF-TF 5.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1653 - - gsj:114376117 239.965