Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1649 ATGGGGAGGCAACCTTGCTGTGAGAAAGTCGGGGTGAAGAAAGGTCCATGGACTGCTGAAGAAGATAGAAAACTGATAAACTTCATTCTGAGCAATGGGCAGTGCTGTTGGCGTGCTGTTCCAAAGCTTGCTGGGCTTCGACGTTGTGGTAAGAGTTGCCGTCTTCGTTGGACTAATTATCTGAGGCCTGACTTGAAGAGAGGCCTTCTCACACACCCAGAAGAGCAGCTCGTTATTGATCTTCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGGACAGACAACGAGATTAAAAATCACTGGAACACTCACATTAAGAAAAAACTACTTAAGATGGGTATTGATCCTGTTACTCACGAACCTCTTAACAAACAACAAGAAGCCTCATCCAAAGAGAATAACATTAACATCCATCAGCATGGGGTTCTCAACTCGGAAGAGAATTCCACCTCATCCCTTTTGGTGGATAGCGTTTGCAGTGATGTGTCTCTAATGAACAGCATGTGGCTGGATGAAACTCCTATGATAGACACATCATGGGACATAACACCTCAAGTAGATAATGCAAATACTAACATGGGCTTGCCAATATGGGAGCAGGATAATTGTGCTTCGTTGTTGGACTGCCAAGACTTTGGTATTCATGATTTTGGGTTTAATTAA 684 0.4444 MGRQPCCEKVGVKKGPWTAEEDRKLINFILSNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTHPEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQQEASSKENNINIHQHGVLNSEENSTSSLLVDSVCSDVSLMNSMWLDETPMIDTSWDITPQVDNANTNMGLPIWEQDNCASLLDCQDFGIHDFGFN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1649 227 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed11g1649 227 CDD SANT 16 61 IPR001005 -
Aed11g1649 227 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Aed11g1649 227 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed11g1649 227 Gene3D - 70 146 - -
Aed11g1649 227 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed11g1649 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed11g1649 227 CDD SANT 74 112 IPR001005 -
Aed11g1649 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed11g1649 227 Gene3D - 12 67 - -
Aed11g1649 227 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed11g1649 227 SMART sant 13 63 IPR001005 -
Aed11g1649 227 SMART sant 66 114 IPR001005 -
Aed11g1649 227 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 209 - -
Aed11g1649 227 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1649 Aed-Chr11 20360927 20363446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1649 1 226 MYB Transcription Factor Family AT4G22680 56.343 5.81e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g1649 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1649 K09422 - gmx:100800360 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1649 11 20360927 20363446 Aed11g1649 11 20360927 20363446 ECH