Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1646 ATGGCGGAAGAAGCCAAAGCCAAAGGCAACGCGGCTTTCTCCTCAGGCGACTACGATGCCGCCATCCGGCACTTCTCGGACGCCATCGCCTTGGCCCCCACCAACCACGTCCTCTATTCCAACCGATCCGCCGCATACGCCTCCCTCCGAAACTACATCGATGCCTTAGCTGATGCGAAAAAGACCGTTGAGCTGAAGCCCTACTGGTCCAAGGGCTACAGCCGTCTCGGTGCCGCGCATCTTGGCCTTTCCCAATACGACGACGCCGTTTACTCCTACAAAAAGGGCCTCGATATCGACCCCACTAATGAGGCCCTCAAGTCCGGCTTAGCCGATGCGGAGAAGGCCCTGGCCGCCGCCTCCAGGCCCCGCTCCTCTCCTTCTAGTGCTAACCCCTTCGGTGACGCTTTCTCTGGGCCTGAGATGTGGGCCCGTCTCACTGCTGATCCCACCACTAGGGCCTACCTCCAACAGCCCGATTTCGTTAAGATGATGCAGGATATCCAGAAAGACCCTAATAACCTCAACTTGCACTTGAAGGACCAGAGAATCATGCAGGCCTTGGGGGTTTTGCTCAACGTCAAGATTCAAACCCCTCCCGCTGGCCCCGACACCGATATGCCCGATTCGTCCTCACCATCTGAGAGGAAGAGAGCGGCGGAAGCTGAGCCCACCAAGCAGCCCGAGCCCGAGCCCGAACCCATGGATTCCAATGATGAGGACAGGGAGGTGAAGCAGAGGAAGGCCGAGGCTTTGAAGGAAAAGGAGGCTGGGAATGCAGCGTATAAGAAGAAGGATTTTGATACCGCCATTCAACATTACTCCAAGGCTTTGGAGTTGGATGATCAGGATATTTCGTATCTCACTAACCGCGCTGCTGTCTACTTGGAAATGGGAAAGTATGAGGAATGCATACAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGATTATAAGATGTTAGCAAGAGCTTTGACAAGGAAAGGAACTGCCTTGGTGAAAATGGCAAAGAGCGCAAAGGATTATGAGCCTGCCATTGAAACTTTCCAGAAAGCACTCACTGAGCACCGCAACCCTGAAACTTTGAAGAAACTTAATGAAGCTGAAAAGGCGAGGAAAGAACTAGAACAACAAGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGAAATGAATTCTTTAAGCAGCAGAAGTATCCCGATGCTGTGAAGCATTACTCAGAGTCTATCCGAAGAAATCCAAAAGATGCTAGGGCTTATAGTAACAGAGCAGCATGCTACACTAAATTGGGGGCAATGCCTGAAGGTTTAAAAGATGCTGAGAAGTGCATTGAACTTGATCCAACCTTCGTAAAAGGTTATACCAGGAAAGGTGCGGTACAGTTTTTCATGAAGGAGTATGACAAGGCTTTGGAGACATATAGGGAGGGTTTGAAATATGACTCTAACAACCAGGAGTTGCTTGAAGGCATTAGAACATGCATACAACAAATTAACAAGGCTAGCCGTGGAGACTTAACTCCTGAGGAGTTGAAGGAGAGACAGGCCAAGGGAATGCAGGATCCAGAAATTCAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCAAAGGCTGCACAGGAACACACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGGTCAGTGCTGGAATTGTCCAGATGAGGTAG 1740 0.4954 MAEEAKAKGNAAFSSGDYDAAIRHFSDAIALAPTNHVLYSNRSAAYASLRNYIDALADAKKTVELKPYWSKGYSRLGAAHLGLSQYDDAVYSYKKGLDIDPTNEALKSGLADAEKALAAASRPRSSPSSANPFGDAFSGPEMWARLTADPTTRAYLQQPDFVKMMQDIQKDPNNLNLHLKDQRIMQALGVLLNVKIQTPPAGPDTDMPDSSSPSERKRAAEAEPTKQPEPEPEPMDSNDEDREVKQRKAEALKEKEAGNAAYKKKDFDTAIQHYSKALELDDQDISYLTNRAAVYLEMGKYEECIQDCDKAVERGRELRSDYKMLARALTRKGTALVKMAKSAKDYEPAIETFQKALTEHRNPETLKKLNEAEKARKELEQQEYFDPKLADEEREKGNEFFKQQKYPDAVKHYSESIRRNPKDARAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQFFMKEYDKALETYREGLKYDSNNQELLEGIRTCIQQINKASRGDLTPEELKERQAKGMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1646 579 ProSiteProfiles TPR repeat profile. 458 491 IPR019734 GO:0005515
Aed11g1646 579 MobiDBLite consensus disorder prediction 119 139 - -
Aed11g1646 579 SUPERFAMILY TPR-like 1 114 IPR011990 GO:0005515
Aed11g1646 579 SMART tpr_5 2 35 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 424 457 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 70 103 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 390 423 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 326 363 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 458 491 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 36 69 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 251 284 IPR019734 GO:0005515
Aed11g1646 579 SMART tpr_5 285 318 IPR019734 GO:0005515
Aed11g1646 579 Gene3D Tetratricopeptide repeat domain 389 508 IPR011990 GO:0005515
Aed11g1646 579 SUPERFAMILY TPR-like 250 378 IPR011990 GO:0005515
Aed11g1646 579 Coils Coil 362 382 - -
Aed11g1646 579 Pfam STI1 domain 520 571 IPR041243 -
Aed11g1646 579 Pfam STI1 domain 140 193 IPR041243 -
Aed11g1646 579 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Aed11g1646 579 MobiDBLite consensus disorder prediction 196 257 - -
Aed11g1646 579 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 578 - -
Aed11g1646 579 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Aed11g1646 579 PANTHER TPR REPEAT CONTAINING PROTEIN 1 578 IPR045248 GO:0006457|GO:0030544|GO:0051879
Aed11g1646 579 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Aed11g1646 579 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Aed11g1646 579 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Aed11g1646 579 SMART CBM 528 567 IPR006636 -
Aed11g1646 579 SMART CBM 139 178 IPR006636 -
Aed11g1646 579 Coils Coil 235 255 - -
Aed11g1646 579 ProSiteProfiles TPR repeat profile. 251 284 IPR019734 GO:0005515
Aed11g1646 579 Pfam TPR repeat 397 438 - -
Aed11g1646 579 Pfam TPR repeat 258 299 - -
Aed11g1646 579 Gene3D Tetratricopeptide repeat domain 248 382 IPR011990 GO:0005515
Aed11g1646 579 SUPERFAMILY TPR-like 389 502 IPR011990 GO:0005515
Aed11g1646 579 ProSiteProfiles TPR repeat profile. 390 423 IPR019734 GO:0005515
Aed11g1646 579 Pfam Tetratricopeptide repeat 459 491 IPR019734 GO:0005515
Aed11g1646 579 MobiDBLite consensus disorder prediction 210 257 - -
Aed11g1646 579 Pfam Tetratricopeptide repeat 6 35 IPR013105 -
Aed11g1646 579 Gene3D - 509 579 - -
Aed11g1646 579 Gene3D - 130 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1646 Aed-Chr11 20352136 20355351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1646 1 99 U-box Gene Family AT3G07370 28.283 2.06e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1646 K09553 - gmx:100776102 1015.76