Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1625 ATGGCTTCTTCTTCAGTAGTCATGGTGTCACTGGTGCAAGTAGCGATTGTGGTTTTCACTTTCCATGCAGCAACAATGAGATGTGAAATATTATCTTCCAGTTCCACGAACTCCTCCAAGAGTAGCCACCACTGGATCGGACCAGTTGGTCACCGTAAAATCACCGTTGACATTAACGGCGGTGGCCACTACCGGTCCGTCCAAGACGCCGTCGACGCCGTCCCCGACAACAACAGAAAGAATATCCTTATTAAAATCAACGCCGGATGCTACAAAGAAAAGGTGGTGGTGGCTGCGACGAAGCCATACATAACGTTTGAAGGGGAGGGTAAGGAAGTGACGGTAATAGAGTGGCATGATCGAGCGAGTGACCCAGGTCCCAGTGGACAGCAGTTGCGTACTTACAGAACCGCTTCAGTTACTGTTTTTGCCACCTATTTTTCAGCCAGGAACATCAGCTTCAAGAACACAGCACCTGCACCAATGCCGGGGATGCAGGGATGGCAAGCGGTGGCGTTTCGGATATCGGGCGACAAAGCATACTTCTCCGGTTGCGGATTCTACGGAGCACAAGACACACTTTGCGACGACGCAGGGAGGCATTACTTCAAGGAATGCTACATCGAGGGATCCATCGATTTCATATTTGGGAATGGGAGGTCCATCTACAAGGATTGTCAGCTACACTCAATTGCAACCAGGTTTGGTTCCATTGCGGCCCACGATAGGAAACACCCAGAGGAGAAGACAGGCTTCGCATTCGTACGATGCAGGGTCACTGGTACGGGCCCGCTCTATGTGGGCCGGGCAATGGGACAGTACTCAAGAATTGTCTACTCCTACACATATTTCGATGATATCGTTGCACATGGCGGTTGGGATGATTGGGACCATGCGGACAACAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCTGTACGTGGGGTCTCGTGGGCCCGAGACTTAGATTTCGAATCTGCTCATCCATTTATCAGGAAGAGTTTCGTCAATGGCAGACACTGGATCGCGCCATCTGATGCTTAG 1068 0.5094 MASSSVVMVSLVQVAIVVFTFHAATMRCEILSSSSTNSSKSSHHWIGPVGHRKITVDINGGGHYRSVQDAVDAVPDNNRKNILIKINAGCYKEKVVVAATKPYITFEGEGKEVTVIEWHDRASDPGPSGQQLRTYRTASVTVFATYFSARNISFKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSIYKDCQLHSIATRFGSIAAHDRKHPEEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHADNKNKTVFFGVYKCWGPGAEAVRGVSWARDLDFESAHPFIRKSFVNGRHWIAPSDA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1625 355 ProSitePatterns Pectinesterase signature 2. 208 217 IPR033131 -
Aed11g1625 355 SUPERFAMILY Pectin lyase-like 51 352 IPR011050 -
Aed11g1625 355 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 355 - -
Aed11g1625 355 Gene3D - 50 354 IPR012334 -
Aed11g1625 355 Pfam Pectinesterase 54 346 IPR000070 GO:0030599|GO:0042545
Aed11g1625 355 PANTHER PECTINESTERASE 9 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1625 Aed-Chr11 20202905 20204457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1625 1 355 Carbohydrate Esterase AT5G47500 73.481 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1625 - - gmx:100816190 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1625 11 20202905 20204457 Aed11g1625 11 20202905 20204457 ECH
Aed11g1625 11 20202905 20204457 Aed6g0550 6 4649877 4684354 PCT