Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1621 ATGGAGCGGCACAAATGCAAGCTCTGCTCCAGAACATTCTCCAATGGCAGAGCCCTTGGTGGCCACATGAAGGCTCACTTAGCCACCCTCCCTCCCAAACCACAACCACTTTCTCACTCCTTCTCTTCTAACTCATCCTCCTCAGAAGAAGCAACACATGATGATGAGAAGGCTGTGATTTACGGGCTAAGAGAGAATCCGAAGAAATGTTTCAGACTCGCAGATCCCGAGTTTGACACGGGCTCTATCGTCGTGCAGGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTGCAACTCGCCGACGATCCAAGCGAGCCCGAAGGCCCGTGAATTCCGAAGCCAAGAGGCCCAAACTGAGTTTCATGGAGTCCCCCGTGAGTTCGGTCTCCGACACCTCCCCCGAGGAAGATGTCGCCATGTGTCTCATGATGCTGTCGAGAGATCACCGATGGAGTAAGGACGATCGTGACGACAACATCATCAACGTTGTTGTTAATGATGTTGATGTCGAAGAGGAGATCAAGTTGAGGAGGACTAGAGTTCGCGGGAAGCAGCAGTGTGACAGCTGCGGGAAGAGGTTTCGATCATCACGCGCATTGGGTAGTCACAGAAGTATTTGCGAGAATTCGGGTAACGATAATAGTAAAATCTTCGAATGCCCCTTTTGTTCAAAGGTGTTTGGGTCTGGTCAAGCCCTCGGTGGCCACAAGAGATCTCACCTCATCATGCCTTCTAATTCATCTTCAACTACAACTACTAGAATATTATTCAAAGAGACCACCTTCATAGATCTCAACTTGCCTGCTCCTGCTGAAGATGATGACCAGCTTAGTGTTCTTTCTCATACTCAGTGTGTGTTTTTGGGGATTTGGTTCGTGGTTGTGGACCAGCAGCAGCTCTGGGCTTTGAAAGTACTAAAGTGCAGAAGAATTCCGTTTTGGTGCTCTGATTCTGTTTCACCACCTGTCCTTCTACTTTTGATTGGTTTTCTTCATCATTGTCTTTTCTTTAAATCGCTCGCCGCGTGA 1032 0.4884 MERHKCKLCSRTFSNGRALGGHMKAHLATLPPKPQPLSHSFSSNSSSSEEATHDDEKAVIYGLRENPKKCFRLADPEFDTGSIVVQDRESETESKNPTATRRRSKRARRPVNSEAKRPKLSFMESPVSSVSDTSPEEDVAMCLMMLSRDHRWSKDDRDDNIINVVVNDVDVEEEIKLRRTRVRGKQQCDSCGKRFRSSRALGSHRSICENSGNDNSKIFECPFCSKVFGSGQALGGHKRSHLIMPSNSSSTTTTRILFKETTFIDLNLPAPAEDDDQLSVLSHTQCVFLGIWFVVVDQQQLWALKVLKCRRIPFWCSDSVSPPVLLLLIGFLHHCLFFKSLAA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1621 343 MobiDBLite consensus disorder prediction 28 54 - -
Aed11g1621 343 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Aed11g1621 343 Gene3D Classic Zinc Finger 184 252 - -
Aed11g1621 343 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 283 - -
Aed11g1621 343 SUPERFAMILY beta-beta-alpha zinc fingers 187 241 IPR036236 -
Aed11g1621 343 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Aed11g1621 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Aed11g1621 343 Pfam C2H2-type zinc finger 3 28 - -
Aed11g1621 343 Pfam C2H2-type zinc finger 188 205 - -
Aed11g1621 343 Pfam C2H2-type zinc finger 219 242 - -
Aed11g1621 343 MobiDBLite consensus disorder prediction 82 100 - -
Aed11g1621 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 215 IPR013087 -
Aed11g1621 343 MobiDBLite consensus disorder prediction 82 134 - -
Aed11g1621 343 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Aed11g1621 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 241 IPR013087 -
Aed11g1621 343 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 283 IPR044303 GO:0006355
Aed11g1621 343 SMART c2h2final6 219 241 IPR013087 -
Aed11g1621 343 SMART c2h2final6 4 26 IPR013087 -
Aed11g1621 343 SMART c2h2final6 186 206 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1621 Aed-Chr11 20178708 20180073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1621 1 276 C2H2 Transcription Factor Family AT3G60580 36.656 4.07e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g1621 zf-C2H2_6 1.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1621 - - gmx:100815124 367.851