Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1610 ATGGTGAAGATATCTGTTGGTAGCTTTGATGACTCTTTTAGTGCTGCCTCTCTCAAGGCTTATTTCGCAGAGTTCCATGCAACTCTCATTTTCGTGTTCGCTGGTGTTGGATCTGCCATCGCTTACAACGAGCTTACAAAAGATGCAGCCTTGGATACAGCGGGGCTGGTGGCAGTAGCTGTGGCCCATGCATTTGCACTGTTTGTAGGAGTCGCCATCGCAGCCAACATCTCCGGTGGCCATTTGAACCCAGCTGTCACTTTTGGATTGGCTATTGGAGGCAACATCACTCTCATCACTGGCTTCTTCTACTGGATTGCCCAATTGTTGGGTTCTATCGTCGCATGCCTCCTCCTCAGTTTGACCACCTCTAAGAGCATTCCAACCCACGCACCCGCTGTTGGAGTCAACGCTTTCCAAGGGGTGGTGTTTGAGATTATAATCACATTTGGTCTGGTGTACACAGTGTATGCAACTGCAGCTGACCCAAAGAAGGGATCATTGGGTACCATTGCACCCATTGCTATTGGGTTCATTGTTGGTGCCAACATCTTAGTTGCGGGCCCATTCAGTGGCGGTTCAATGAACCCGGCTCGCTCATTCGGCCCAGCTGTCGTCAGTGGAAGCTTCGCTGATAACTGGATATACTGGGTTGGCCCATTGATCGGCGGAGGTTTGGCTGGCTTCATTTATGGAGACGTCTTCATTGGTTCCTATGCCCCTGTCCCAGCCTCTGAATTCTGA 744 0.5054 MVKISVGSFDDSFSAASLKAYFAEFHATLIFVFAGVGSAIAYNELTKDAALDTAGLVAVAVAHAFALFVGVAIAANISGGHLNPAVTFGLAIGGNITLITGFFYWIAQLLGSIVACLLLSLTTSKSIPTHAPAVGVNAFQGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVVSGSFADNWIYWVGPLIGGGLAGFIYGDVFIGSYAPVPASEF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1610 247 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Aed11g1610 247 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Aed11g1610 247 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 TIGRFAM MIP: MIP family channel proteins 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed11g1610 247 PANTHER AQUAPORIN-8 1 246 IPR034294 -
Aed11g1610 247 PANTHER AQUAPORIN TIP2-2-RELATED 1 246 - -
Aed11g1610 247 SUPERFAMILY Aquaporin-like 16 236 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1610 Aed-Chr11 20119480 20123385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1610 1 246 Major Intrinsic Protein MIP AT5G47450 78.543 6.90e-134 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1610 K09873 - gmx:100527333 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1610 11 20119480 20123385 Aed11g1610 11 20119480 20123385 ECH