Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1603 ATGGCACCACCCAACAAGAATGATGAAACAACCAAGAAAACGAACAACAGAGGAGCATGGACAGCGGAGGAAGATCAGAAGCTAGCCCAATGCATTGAAATTCACGGTGCAAAGAGATGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCATTGATAGCTAAGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCACACAAAGGTGAAACCAGAAACTACTTCACCCGCGGCACAAGCAACACATCAGACTCAGATTAATACTGAGGAAAGAGTAGCAGTAGAGAATAAAGAAGCCACTGATCATGATGGGAGTGGTGACTCAGAATTTAACTTTGATGTTAACGAATTCTTCAACTTCTCCATTGAAGGACCCTATGCGTTGGACTTGGACTGGTTCATCTAG 570 0.4158 MAPPNKNDETTKKTNNRGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHTKVKPETTSPAAQATHQTQINTEERVAVENKEATDHDGSGDSEFNFDVNEFFNFSIEGPYALDLDWFI 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1603 189 MobiDBLite consensus disorder prediction 146 163 - -
Aed11g1603 189 MobiDBLite consensus disorder prediction 1 20 - -
Aed11g1603 189 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Aed11g1603 189 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Aed11g1603 189 CDD SANT 74 113 IPR001005 -
Aed11g1603 189 SMART sant 16 66 IPR001005 -
Aed11g1603 189 SMART sant 69 117 IPR001005 -
Aed11g1603 189 MobiDBLite consensus disorder prediction 126 163 - -
Aed11g1603 189 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Aed11g1603 189 CDD SANT 19 64 IPR001005 -
Aed11g1603 189 Gene3D - 74 147 - -
Aed11g1603 189 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Aed11g1603 189 Gene3D - 9 70 - -
Aed11g1603 189 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 187 - -
Aed11g1603 189 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 6 187 - -
Aed11g1603 189 MobiDBLite consensus disorder prediction 126 145 - -
Aed11g1603 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Aed11g1603 189 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Aed11g1603 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1603 Aed-Chr11 20080710 20081483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1603 11 189 MYB Transcription Factor Family AT3G13540 45.361 3.94e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed11g1603 Myb_DNA-binding 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1603 K09422 - gmx:100791381 321.242