Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1580 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCGCTCTGGCGAAATGGACCACCTGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGATGGAGGACAAAGGGAACTCTAGCAAATTATACCCCTTTACATGCTCGAGCAGAAACTGATGATTATGATGATCAAAGGGTTTCCAGGGTAAAGAGCATATCGATAAATAAGAAGAAAGAAGTGGCATTGCTCAAACGAAAACAGAATCATGATAATGTAGTATCTGGAGGGTTTGCACCTGATTATAACCAGGGATACCAAAAGGTCGTAGATGAAGATATAAGCAACCGATCGAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCACAATTTGGTGGCATGGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATCTATGTACTATTCTTCATCAACAACAGTCTTATTTTTCAGCGTCTTCTGAAGAAGATCTTCTTTTTGAAAGTGATACACCTATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTATATAGCTCGTGAAGAAGAGTCAGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCCAATGAGTGAGGCATATTCTTATTCCGGTGCCATTCTAATGCATAATGATTCCAGTCGCTTGAAGTTGTCATCTCTGGAAGTTGAAAAGATCAGGAACTATACTGGCCAAGGAATGCAGCAGGAACAACTTAAAAGGCATGCTTTTGTACACTATGACAAGTCTCAACTTGAAAGAGTAGAAATCCTTGGCAATCATGAATCGCCATTGTGCTCAATAGATTTAAATGATGTTGTAAACTATGAAGAGTTTTTGAGAATGTTGACAAATGAAGAGCAACAGCAATTACTGAAGTTACTTCCTGTGGTTGATACTGCTAAACTTCCTGATAGCAGCCTTAAAGTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGAAGGAGTCTTCGATATCTCTTTGTTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGCATTATCCAATCTGTCAAAGTCAAAATGGGTAGAACACTATAACTTTCTCAAGAGATGTAAGAACAAAGGTGGAAAGTGTAATACTATGGGATCTACTGGTACAGCATCAACTAATGTTGCAAACATCAAGAGAATGCGCGACAGCAGAAATCAAAACTTTTCAGAATTGAAGACGATAATGAGGAGCCCCAAAAGAATGATCATTGACTGTGAGGGCAAAGAAGCGGTAGAAGATGGTGCTTGCTATAGTCCAAAAAACCTATTTGCTTTGCCTCCCGATGCTGGTTCTCTTTTCCTGGATTCTTTAAACTTTGTTGAGAGTAGTGATCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCACAGGCAGAGCTCTTGCACCCAACTTTAAGCCTTGGTGCTCAAGGCAGCACTAGTACCCGCTCAATCTACTCAAATCTTGTTCACCATTAA 1635 0.4153 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYDDQRVSRVKSISINKKKEVALLKRKQNHDNVVSGGFAPDYNQGYQKVVDEDISNRSSSGSAISNSESCAQFGGMDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHQQQSYFSASSEEDLLFESDTPMVSVEIGHGSVLIRHPSYIAREEESEASSLSVDNKQCPMSEAYSYSGAILMHNDSSRLKLSSLEVEKIRNYTGQGMQQEQLKRHAFVHYDKSQLERVEILGNHESPLCSIDLNDVVNYEEFLRMLTNEEQQQLLKLLPVVDTAKLPDSSLKVMFNSSQFKENLTYFQQLLAEGVFDISLLGAKPEDCKTLKRLALSNLSKSKWVEHYNFLKRCKNKGGKCNTMGSTGTASTNVANIKRMRDSRNQNFSELKTIMRSPKRMIIDCEGKEAVEDGACYSPKNLFALPPDAGSLFLDSLNFVESSDQDLLLEVPSNTSFPQAELLHPTLSLGAQGSTSTRSIYSNLVHH 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1580 544 Gene3D - 297 399 IPR038108 -
Aed11g1580 544 PANTHER OSJNBB0038F03.10 PROTEIN 1 543 IPR044589 -
Aed11g1580 544 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Aed11g1580 544 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Aed11g1580 544 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Aed11g1580 544 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Aed11g1580 544 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Aed11g1580 544 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Aed11g1580 544 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Aed11g1580 544 Pfam Asx homology domain 296 374 IPR028020 -
Aed11g1580 544 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 543 - -
Aed11g1580 544 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 301 414 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1580 Aed-Chr11 19932156 19938139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1580 1 521 C2C2-Gata Transcription Factor Family AT4G17570 53.947 2.25e-166 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed11g1580 ASXH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1580 - - gmx:100803914 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1580 11 19932156 19938139 Aed6g0596 6 5047353 5053566 PCT