Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1579 ATGGCAACACCAGTCAGTAATGGTCATTCTGAAGAAGGAAGATATGAGAAGTCATTGATGGAAAATGGGGAACACACTTTTCTCGCTAGGCCCATGTTTAAGCAGCGGAAAGTTTCTGCCGTTCGTGATTTCCCAGATGGATGTGGACCATCTGCTTTGAGGATTGATCCAGGGTTAAACATAAATATTGCGGGTTGTGGTTCTGCTAATGGTACAATTATTGTGGATAAGAATGGTGAACATTTAGTGGGTGATACTGTCAAAACTTCCAATTGTGAAAATGATGGCCGACATTCTGAAGTAAAAGATTCGCTTCTTACTGAAACTCTTGGCCAAACAACTGACAGTTGTTTGAATGAGGATAACCCCGTAGTCTCATCTCCTCAAGTGAATGGGTCTTCTTCAGAACATGAACCTGCAAAAATTACTACTGGACAAACAATTGACTGTGGTTTTAATAAGGAAAACCCTGTAGTCTTGTCTCATAAAGTGGATGGACCTACTGCAGAAGTTGAAGCTGAAGAAGTGACTGTTGATCAAACAACTGACCGTGTTTTGAACAAGGAAAACCGTGAGGTCTCATCTCGTCAAGTGGATGGGCCTAATGCAGAAGATGAGCCTGCAAAAGTGACATTAGCGGACATGGAAATTTTGAATACAGAGTCTGCAAGAACTGCAAACACTGTAAAATGTGACTCCTTTTGTATGTTGAAATCATCTCAAGCAGGTGAGATGGATATGTCAGGTGGTTCAAAGCCCTTATTGTCCAATGTCAATATATCCGGTTCTAGTGCTTGCATGGTGGAGCCTGTAACTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCCCTCAGAGACTTCCCAGCTTTATGTGGACGCAATGCTTCACATCTCAGTAAGGACAAGGATGTAGAGGGGATCTCTTCCTTAAATAACAAGAAAATGTGTCAACAGAACCTGGCTGTTGATGACAACAATCCATTGAAAGAAGTCGGAGCTGTGGCCCTGGATGACAGTCCATTGAAAGAAGTAGCAGCCACTGATGTAAAAGAGATCAAAAGTAACATCCAAGATGAATATGGTTGCAAGAGACAGCTTGTGAACATTGTCCAAACTGATTCTGAAAGTAATGCTGCAAAGAGAGTGAAGAAGCCGGTGGAAGTCAATAGAGAAAAGCACGTTTCACTTCCTGAAGAAAGTAGTCATCATATTAAAATAAATTCCAAGGCAGTGGTAAAAGAGGTAAATAGGGATGAGACAAAGTGTTTGGATCTATCTCATTCTAAGCATAAGTTGAAAGGAATTTCTAATGGATTGCAGGTCTCACCAGACAGGAAAGTAGTACAAGGTTTGATGGCTAAATCAGAATGTCCTTGGAGGTCTGACAAAGGTTCCTCGAAATTTAAGTTGGGAGATGCTAAAAATGAAGGCAAGAAGATGAAAGTAAATTTTGCATCGCCTGACAGGTCTAAAACAGCTATCATGAGTAAAGGTGCAGGGAATTATTCTGGGCAGAAGCCTTTGAAAAAGAAAAAAGGAAATGTTACTTCTGAAGGTGAATTAGTAATTTGGGAAAAGAAGGATAGTCTTGACCCTAATGAAAATAATGATGACCTTCAAATTGTTCTGCAATCACATGAATTTGATGTAAATGTTACTCCCTCCTCTTCTCATTCTAATTCCATTGGCGATGAGGATGACTCAAATGTGACCCGAAAAAAAGTGAGGAAAACATTACGGTTGTTTCAAGTTGTTTGTAGAAAGCTTTTACAGGAACTAGAATCAAAAAAATCAAATGAGCGAACTAGTGGTAAGAGGGTTGATTTACTTGCTGCAAAGATCCTTAAGGAGAATGGGAATTATGTTAACTCAGGCAAGCAGATACTGGGCGCTGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAATATAGGGTGGAGCTTAATATAGTTGGCCTTCATCGTCAGATTCAGGGTGGCATAGATTATGTGAGGCACAATGGTAAGATCCTTGCAACCAGTATTGTTGCGTCAGGGGGCTATTCCGATGAGTTGGATAATTCGGATGTCTTGATATATACAGGGCAGGGTGGGAATGTGATGAACACTAAAGATCCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGGATCATCCTGTTAGGGTGATTCGTGGCTCTGAATCAATGGACGGAAAGTGCAAGATATATGTTTATGATGGACTGTATGAAGTTGAATCATGTTGGCAGATTGTGGGACCACATGGGAAGCTGGTTTATAGGTTTCGCCTGCGAAGAAAACCTGGTCAACCAGAGCTTGCTTTGAAGGAGGTGAAGAAATCTAAGAAGTTCAAAACAAGAGAAGGTGTATGTGTTGATGATATTTCTTATGGAAAAGAAAGGATTCCCATATGTGCTGTGAACACCATAGATGATGAAAACCCCCCTCCGTTTAATTACATAACTAGCATGATATACCCCAATTGCCATTTCCTTCCCGCAGAAGGATGTGATTGTACTAATGGATGCTCAGATTTGGAGAAATGTTCATGTGTAGTGAAAAATGGGGGAGAGATTCCATTCAATCACAATGAGGCTATTGTACAGGCAAAGCCTTTGGTGTATGAGTGTGGACCTTCTTGTAAATGTCCTTCAACATGCCATAATAGAGTCAGCCAACTTGGCATAAAGTTTCAACTTGAAATATTTAAAACCGATGCAAGGGGATGGGGTGTGAGATCCCTGAATTCAATCCCTTCAGGAAGTTTTATTTGTGAATATATAGGGGAGCTTCTTGAAGACAAGGAAGCTGAACAAAGAACCGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTATAGCAACAGTACTCTTTGGGATGGACTTTCGAATCTCATGCCCGATGCACACACAGCTTCTTGTGAAGTTGTGACGGATGGTGGTTTCACCATTGACGCTGCTCAGTTTGGTAATGTGGGGAGATTCATTAACCATAGTTGCTCCCCAAATATTATTGCTCAGAATGTCCTTTATGATCACCATGACACCAGGATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCCTTGCAAGAGCTGACTTATGATTACAACTATGAAATCGATCAAGTCCGTGATTCTGATGGCAATATAAAAAAGAAGTATTGCTATTGTGGTTCTGTGGATTGTACTGGCAGGATGTATTGA 3237 0.4078 MATPVSNGHSEEGRYEKSLMENGEHTFLARPMFKQRKVSAVRDFPDGCGPSALRIDPGLNINIAGCGSANGTIIVDKNGEHLVGDTVKTSNCENDGRHSEVKDSLLTETLGQTTDSCLNEDNPVVSSPQVNGSSSEHEPAKITTGQTIDCGFNKENPVVLSHKVDGPTAEVEAEEVTVDQTTDRVLNKENREVSSRQVDGPNAEDEPAKVTLADMEILNTESARTANTVKCDSFCMLKSSQAGEMDMSGGSKPLLSNVNISGSSACMVEPVTRRYLPRRKVSALRDFPALCGRNASHLSKDKDVEGISSLNNKKMCQQNLAVDDNNPLKEVGAVALDDSPLKEVAATDVKEIKSNIQDEYGCKRQLVNIVQTDSESNAAKRVKKPVEVNREKHVSLPEESSHHIKINSKAVVKEVNRDETKCLDLSHSKHKLKGISNGLQVSPDRKVVQGLMAKSECPWRSDKGSSKFKLGDAKNEGKKMKVNFASPDRSKTAIMSKGAGNYSGQKPLKKKKGNVTSEGELVIWEKKDSLDPNENNDDLQIVLQSHEFDVNVTPSSSHSNSIGDEDDSNVTRKKVRKTLRLFQVVCRKLLQELESKKSNERTSGKRVDLLAAKILKENGNYVNSGKQILGAVPGVEVGDEFQYRVELNIVGLHRQIQGGIDYVRHNGKILATSIVASGGYSDELDNSDVLIYTGQGGNVMNTKDPEDQKLERGNLALKNSSEEKDHPVRVIRGSESMDGKCKIYVYDGLYEVESCWQIVGPHGKLVYRFRLRRKPGQPELALKEVKKSKKFKTREGVCVDDISYGKERIPICAVNTIDDENPPPFNYITSMIYPNCHFLPAEGCDCTNGCSDLEKCSCVVKNGGEIPFNHNEAIVQAKPLVYECGPSCKCPSTCHNRVSQLGIKFQLEIFKTDARGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNYSNSTLWDGLSNLMPDAHTASCEVVTDGGFTIDAAQFGNVGRFINHSCSPNIIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYEIDQVRDSDGNIKKKYCYCGSVDCTGRMY 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1579 1078 ProSiteProfiles Pre-SET domain profile. 842 902 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1579 1078 SUPERFAMILY SET domain 789 1054 IPR046341 -
Aed11g1579 1078 Gene3D - 612 793 IPR036987 -
Aed11g1579 1078 SUPERFAMILY PUA domain-like 613 786 IPR015947 -
Aed11g1579 1078 ProSiteProfiles YDG domain profile. 630 773 IPR003105 -
Aed11g1579 1078 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 478 1078 IPR025794 GO:0016571
Aed11g1579 1078 SMART set_7 905 1054 IPR001214 GO:0005515
Aed11g1579 1078 SMART G9a_1 625 777 IPR003105 -
Aed11g1579 1078 CDD SET_AtSUVH-like 823 1049 - -
Aed11g1579 1078 Pfam SAD/SRA domain 629 777 IPR003105 -
Aed11g1579 1078 MobiDBLite consensus disorder prediction 114 140 - -
Aed11g1579 1078 ProSiteProfiles SET domain profile. 905 1048 IPR001214 GO:0005515
Aed11g1579 1078 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 498 1077 - -
Aed11g1579 1078 Gene3D SET domain 794 1078 IPR046341 -
Aed11g1579 1078 SMART preset_2 799 889 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1579 1078 Pfam SET domain 916 1048 IPR001214 GO:0005515
Aed11g1579 1078 ProSiteProfiles Post-SET domain profile. 1062 1078 IPR003616 -
Aed11g1579 1078 Pfam Pre-SET motif 802 897 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aed11g1579 1078 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 498 1077 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1579 Aed-Chr11 19926855 19930091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1579 562 1075 Su(var)3-9 homologs AT5G04940 42.243 1.62e-119 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed11g1579 SAD_SRA 2.2e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1579 K11420 - gmx:100803378 1845.48