Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1578 ATGGCAGTGTTGCAGGCGTCTCTTGGCTATGGAAGAATGGATCTGGCTGTGGAGCATGCTATCAGGTGCAAAATAGCACAATTCTGCGATGAGAATGGAGCATACGTGGTGGTGACAGATTATGGTGAGGGAGACAGAACAGACTTTATAATGAGTCCACGTGGATACTCAAGATTGGGCAGAAACGAAGATGCATCTGCAGAGTTATTCAAATACGGTGTAGTGGATGTAGAATACAGAAGGGTCCCCTGTAGATACGGTGGCTATAATCTCTTGGTTAAGGTCCATGAACACAGTAGAAATCCTCACTACTTAGCCATTATCATTCTCTATGTTGGTGGAACTTATGACGTAACTGCTGTTCAGTTGTGGCAGGAAGATTGCCAAGAGTGGAGGCAAATGCGCAGGGCATTTGGGACTGTGTTTGACGCTGAGAACCCACCAAGAGGTGACATCAAGTTGAGGTTCCAATTGAATGGTAATGCAGAGCAGTATTGGGTGCAATCCAAGAATGTTATCGCTAGTAATTGGGAGGCTGGAGCTGTTTATGACTCGGAAATTCAGCTTGGTTAA 573 0.4538 MAVLQASLGYGRMDLAVEHAIRCKIAQFCDENGAYVVVTDYGEGDRTDFIMSPRGYSRLGRNEDASAELFKYGVVDVEYRRVPCRYGGYNLLVKVHEHSRNPHYLAIIILYVGGTYDVTAVQLWQEDCQEWRQMRRAFGTVFDAENPPRGDIKLRFQLNGNAEQYWVQSKNVIASNWEAGAVYDSEIQLG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1578 190 Gene3D - 18 84 IPR036908 -
Aed11g1578 190 SUPERFAMILY Barwin-like endoglucanases 21 88 IPR036908 -
Aed11g1578 190 PRINTS Expansin/Lol pI family signature 131 145 IPR007118 GO:0005576
Aed11g1578 190 PRINTS Expansin/Lol pI family signature 171 185 IPR007118 GO:0005576
Aed11g1578 190 PRINTS Expansin/Lol pI family signature 72 88 IPR007118 GO:0005576
Aed11g1578 190 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 103 185 IPR007117 -
Aed11g1578 190 Gene3D - 85 186 IPR036749 -
Aed11g1578 190 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 21 89 IPR007112 -
Aed11g1578 190 PANTHER EXPANSIN-B3 18 189 - -
Aed11g1578 190 PANTHER EXPANSIN-LIKE B1 18 189 - -
Aed11g1578 190 Pfam Expansin C-terminal domain 93 173 IPR007117 -
Aed11g1578 190 SUPERFAMILY PHL pollen allergen 90 185 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1578 Aed-Chr11 19924689 19926413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1578 19 189 Expansin Gene Family AT4G17030 57.895 5.07e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1578 - - gmx:100802855 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1578 11 19924689 19926413 Aed6g0601 6 5085493 5087602 PCT