Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1574 ATGAATCCATGGAACCTGAGAGCTTCCAAGTTATCACTCTCTCAACAACTTGCTTATCCTCCTCATCTCTTTGTAGAAGAGATTCCTAACATGGGAAATTCCAGTGGTGTGAGCAAGGAAAGTAGAGGTTCACAGATGACAATATTTTATGGTGGCCAAGTTCTTGTCTTTGATGATATTCAAGCTGACAAAGCCAAAGACATCATGTGTTTTGCCGGCAAAGGAATAATGTCTCAAAACAAAGCTTGCACATTCCCTTCTGCTGCTCCCAGCTGTAGACCATTTCCTTTTCTTATGAATATCATCCCTACAACGGTTCAAGACCACCACCCTCAAGCACCAACCAAACCTGTTATATGTGATCTACCATTGGCTAGGAAAGCTTCACTTCACCGAATTGCTGCTAGAGCACCATATCACACAAGCAATCACATGGCAGCCCTTAATAAGTCAGTTGAATCCATGCCATGGCTCACCTTGGCACCTAAATCACCCCAGCAAGACGAGTCAGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA 546 0.4322 MNPWNLRASKLSLSQQLAYPPHLFVEEIPNMGNSSGVSKESRGSQMTIFYGGQVLVFDDIQADKAKDIMCFAGKGIMSQNKACTFPSAAPSCRPFPFLMNIIPTTVQDHHPQAPTKPVICDLPLARKASLHRIAARAPYHTSNHMAALNKSVESMPWLTLAPKSPQQDESDSDSSSSFVLF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1574 181 MobiDBLite consensus disorder prediction 161 181 - -
Aed11g1574 181 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 37 161 IPR040390 -
Aed11g1574 181 Pfam tify domain 42 73 IPR010399 -
Aed11g1574 181 SMART tify_2 39 74 IPR010399 -
Aed11g1574 181 PANTHER PROTEIN TIFY 10A 37 161 - -
Aed11g1574 181 ProSiteProfiles Tify domain profile. 39 74 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1574 Aed-Chr11 19891605 19893966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1574 26 161 Tify Gene Family AT1G19180 31.818 3.54e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Aed11g1574 tify 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1574 K13464 - gmx:100800709 258.07