Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1554 ATGGCGCTTTATCTTTTCTGTCTTGTTCTTGTTATCACCTTGATTTTCATGCAAACTCTGGCAGATACTTCATTCATTCATTCTCGGGCAGCATATTATCCAAATTCTGAAGAACACGGAACAGATGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCTATGGTCAATGGTGGGGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGTTGTGGCGCCTGTTACCAAGTGAGGTGTACAAACAGTGGCTATTGCTCAGAAAATGGTGTCACTGTAGTTATAACCGACCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACTACTGATGCAGCTGCTTCACTATTAGCTCTTGGTGTGGTTGATATTCAATATAGACGTGCTGCATGCAGCTACCCAGATAAAAACATAACAATCAAGATAGATGAGAGCAGCAACAACCCTTATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAGGAGAGATATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGATAGGAGCCATGGAGCAGTGTGGACTACTACATCTCCACCAAGTGGACCTTTGTCTTTAAGGATGTTGTTTAGTGAAGAAGAAGAAGAAGAGGGAGAAGAATCATGGGTTGTTCCTGTTAACAACATACCTGGAGACTGGAAGGCTGGAGAAACATACGACACAGGGGTACAAGTGAACCAATAG 762 0.4252 MALYLFCLVLVITLIFMQTLADTSFIHSRAAYYPNSEEHGTDVGACGFGSFGAMVNGGDVSAASSLYRNGVGCGACYQVRCTNSGYCSENGVTVVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIQYRRAACSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTTTSPPSGPLSLRMLFSEEEEEEGEESWVVPVNNIPGDWKAGETYDTGVQVNQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1554 253 Gene3D - 13 143 IPR036908 -
Aed11g1554 253 Pfam Lytic transglycolase 63 137 IPR009009 -
Aed11g1554 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 247 IPR007117 -
Aed11g1554 253 PANTHER EXPANSIN-B3 7 252 - -
Aed11g1554 253 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Aed11g1554 253 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Aed11g1554 253 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Aed11g1554 253 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 7 252 - -
Aed11g1554 253 SUPERFAMILY PHL pollen allergen 147 246 IPR036749 -
Aed11g1554 253 SUPERFAMILY Barwin-like endoglucanases 11 146 IPR036908 -
Aed11g1554 253 Pfam Expansin C-terminal domain 149 218 IPR007117 -
Aed11g1554 253 Gene3D - 144 251 IPR036749 -
Aed11g1554 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1554 Aed-Chr11 19704592 19706210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1554 5 249 Expansin Gene Family AT4G17030 42.276 7.24e-59 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1554 - - gmx:100794009 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1554 11 19704592 19706210 Aed6g0629 6 5386377 5388237 PCT