Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1546 ATGTGGTTCTTAAGCAGCGATGGGAACTGTTCAGTACTCAGTAGTCACAGACACCCTTCAACGACCGTAGTTAAGCCTCCTAACTCACTTCCCCTTTCCTCTCTCACTCTCTTTGCTTTGTTTGTCTTCAACGGAATAATAAGAGCAGAAAGAAAGAACACAACTTTGGCCAGAGAAGTTGGTAGGGGCATTTTCTTTTCAGCCAAGGTAGTAGGAAACATAAAAAGGCTAGGAAAAAAAAAGAACCACTTTCCTAGGGGACCCAGTGACGATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATACTGGTTCTGCTGCTGAAATAAGAGAACAGCTTGAGGCCATGGACTATAATGTTTCCATTTTCTACAACGAGAATGAAGCCTTGTCAGCACTCTCTAGTAGTCCTGAAGGCTTCCATGTTGCTATTGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGTCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAATAAACCTCTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGCTCACAAGGCATTCAATGCTGCTGGGGCAAATGTCCTGTCTGAATCACTGAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTCCCAACAGACAATGGACAAGATAAGAGTAGGATTTCAATTGATTTAGAGAATGTGTCGAGGTTTAGTGATAATAACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAACAGGGGACAAGGTTACTGGACGATGGAGATTGCCATGAGCAGAATAATTGCTCAACAGAAAAAGAAAGTGGTGAACATGATGGGGAATGCAAATCTGTCGAAACTTCATGTGAGAATTTGAATGCCAAAAGTTCTCCTCTACCAAGGGATTCTGATAAGACTCTGATTAAGGAGGAAGAGGATTTTGCTAATGGTTCCAAGGGTGAGAGCGCTGTTTCACTGAATCCACATAGTAAAATGTTTCTCAGCAATGGCGATGGTAATACATCTCCAAATAAAATGGGTGTACCTATCGATTCATATGAGATGAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCAGAGCTGCATAAAAAATTTGTAAAGGCTGTTGAACAACTAGGTATTGATCAAGCCATTCCTTCCAGAATATTGGAGATAATGAAAGTGGAAGGCTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCGGGGAAGAAGATCGAAAATGGCATAATCAAAGAGATCCACTGCAAAGGAACTATTATATGCAAAGACCAATCATGGCCTACCCTCCATATCATTCTAATCATACTCACACCCTTTCTCCAGCTCCTATATATCCTATCTGGGGACAACCTGGCAGTCAAACAGCTGGCGTACAGATTTGGGGCCATCCTGGTTATCCCTTGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCCAGGGGTGCATGTGGATGCTTGGGGATGTCCATTGTTGCCACCTCCTCAAACTCCTTGTTTTCCCTACAATCAAAATATTATAACTGGATTGCACAATCCTAAAGCAGTGGACTATAGTTTCAGCATGCCACGAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTGGACAAGGTAGTGAGGGAAGCAATGAGCAAGCCATGGCTACCTTTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAACTCTCCAAACAAGGCATGTCCAGCATCCCTCTTGGCAACAAGGGTTCTTCAACTCCTAAACCCTGCTGA 1974 0.4377 MWFLSSDGNCSVLSSHRHPSTTVVKPPNSLPLSSLTLFALFVFNGIIRAERKNTTLAREVGRGIFFSAKVVGNIKRLGKKKNHFPRGPSDDAKPAMVCTANDLQGWKDFPKGLRVLLLEGDTGSAAEIREQLEAMDYNVSIFYNENEALSALSSSPEGFHVAIVEVSTSCSLGGFKFLENAKDLPTIMTSKDQCLNTMMKCIALGAVEFLNKPLSEDKLKNIWQHVAHKAFNAAGANVLSESLKPVKESVESMLQLPTDNGQDKSRISIDLENVSRFSDNNHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHEQNNCSTEKESGEHDGECKSVETSCENLNAKSSPLPRDSDKTLIKEEEDFANGSKGESAVSLNPHSKMFLSNGDGNTSPNKMGVPIDSYEMKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPGEEDRKWHNQRDPLQRNYYMQRPIMAYPPYHSNHTHTLSPAPIYPIWGQPGSQTAGVQIWGHPGYPLWHPTESWHWKPYPGVHVDAWGCPLLPPPQTPCFPYNQNIITGLHNPKAVDYSFSMPRSSFEHHPAEEVVDKVVREAMSKPWLPLPLGLKPPSMDSVLAELSKQGMSSIPLGNKGSSTPKPC 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1546 657 SMART REC_2 113 223 IPR001789 GO:0000160
Aed11g1546 657 MobiDBLite consensus disorder prediction 368 395 - -
Aed11g1546 657 Gene3D - 405 466 - -
Aed11g1546 657 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 409 464 IPR006447 GO:0003677
Aed11g1546 657 ProSiteProfiles Response regulatory domain profile. 114 227 IPR001789 GO:0000160
Aed11g1546 657 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 406 465 IPR017930 -
Aed11g1546 657 Pfam Myb-like DNA-binding domain 412 461 IPR001005 -
Aed11g1546 657 MobiDBLite consensus disorder prediction 282 309 - -
Aed11g1546 657 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 96 652 - -
Aed11g1546 657 SUPERFAMILY Homeodomain-like 408 465 IPR009057 -
Aed11g1546 657 Gene3D - 113 237 - -
Aed11g1546 657 PANTHER TRANSCRIPTION ACTIVATOR GLK1 96 652 IPR044825 GO:0003700|GO:0045893
Aed11g1546 657 MobiDBLite consensus disorder prediction 361 395 - -
Aed11g1546 657 SUPERFAMILY CheY-like 111 230 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1546 Aed-Chr11 19666643 19672336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1546 96 645 Response Regulator Gene Family AT4G18020 48.797 6.27e-139 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed11g1546 Myb_DNA-binding 3.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1546 - - gmx:100784905 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1546 11 19666643 19672336 Aed6g0642 6 5450206 5457627 PCT