Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1534 ATGTGCTCAATCAATTCACACAAAAAATTAGGGGTAATTATGGGTTGCAATGTGAAGAACAAACACAGTCGAGCTAATCGGAAAGCTCGTACGGTGAAACCCGATTCTGATTCATCTTCCAATTCCAACAAGAAATGGATGGTTCCCTATAAATACTATGATCTCAAGGGTCCTAATCCCGAGTCAAACCCTAATGTTGACTCATCTAGCTGGGTTTTGTGCACTGAGCCTCAATTGGAAAACATTCTGTTGAAAAACATTGAAATCATATATAATGACACTGTCTCAAAGCTTGTTGCGTTGGGCCACACCGAGGATCTCGCTGTCAAAGGGGTTCTGCATAATGGACATTGTTATGGTGCCAATGATTTGGCAACAAACGTACTGCACAACAGCTTGGCTTGTTTGAAAAAGGGTATCTTGGTCGACGATGAGTTCAGTCCTGCGTTCCCTAATTTGAAGAAGCTTCAGGAGTACGCTCTGATGAATCTTGTGTCTTTGTTGCAAGAGGTGAGGCCTGATTTAAGTAGGGGTGATGCTATGTGGTGTCTCCTCATGAGCAATTTCCATGTGTTGAAGGCAGGCGCCATCCCAATTCCTGTTGGAAACATGTGTCCTCCTCCTCCTCTTCTAACCGAGCTTGAGAACGCTGGATGGCGATTTGCAAAGGAGGGAGGCTCTGGTTTTCCTTTGAACGGGTTCTTTTCTGGTACCGAGATGACTATACGGTTACAGAGAGATATTGAATTCCCAAAAAGACTTGATCTTACTCCTGCCATGAAGAGTTTGTTGAAAAGAAATGTTGCAATGTTTGCTGATGGTTATAGGGCTAATTCAAAACAGTTGCAGTCACAGCCCAGTGAATTTCCTGGATTTAGCACTGTTTCAAAATTGGATTCTTCATCTGTTTCTGGGACTGCAGTCCTTGGTGAACAGCAGCCCAGTGTCTCTCGCAAGCGGAATGACCAGGAGGACTTGAACACTGTGCTGAGTAAATTTCTCGATCTAAATATTGATGAGACTGTGGAGTTTGTGGCAGAAGATGAGAAGGAAGAGGTGATAGTCACTCTAGTTAATCAGATAAAGGATCTTGAGAAACAGGTCAAGGAGCGGAGAGATTGGGCTCACGAGAAGGCAATCCAAGCGGCAAAAAAGCTAAGCGGTGATCTGATTGAGCTGAAAAAGTTCAAGATGGAAAGAGAGGAGAAACAAAAACTGAAGAAGGAGACAGAGGCAGCTGAGGAGCTTGACGACCCAACCTTGTTGCGACTCTCAGAAATGGAGAATGCCTTGAGAAAGACTAGTGGTCAAATGGACCAAGCAACTGCAGCTGTCAAAAAACTTGAGGCGGAGAAAGCTGAAATCAAAGCAGAGTTAGAGGCCTCTAAATTAAGTGCATCAGAGTCAGTCACAAGCTGCTTGCAAGTTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGAAAGCCAAGATACAACAGGATATTTCAGATGAAAAACTGAAGATATTGGAGATACAAGAAGAATTGGCTCGGACTAAACAGTGTGCAAAGGAAACTGAGGTCACAAGGAAGGAAGAGTTGAAGGCTAAGGAGGAAGCCTTTGGACTAATTGCAGAGGAACGCCGTTCTAAGGAAGCAGCTGAAGCTAATAAAAAACGAAATCTTAAGGCTTTACGCCTGAAGATAGAGATAGATTTCCAGCGTCGGAAGGATGATCTCCTTAGGCTTGAGCAGGAGATTTTGCACCTTAAAGCACCTGCACAGTCTACTACTTTTCCTACAAGTGAGTCTGAGGATGCAGAGCCCCAGAGAGAGACACTTGCTAGGCTTCTGCAGGAGTTAGATAACGTGAAGGATTTTTCTGGAAAAGAAGTCGATGGCAATAGAGAATGCATTATATGTGGAAAGGATGAAGTTTCCGTAATTTTCTTGCCATGTGCACACCAAGTTATGTGTTCTAGTTGCGGTAAAGAGTATGGGAAGAAGGGTAAGGCTGTTTGTCCATGCTGCCGGGTTCCGATCGAACAGAGAATTCCTATATTTGGGGCAAGTTCGTAG 2076 0.4388 MCSINSHKKLGVIMGCNVKNKHSRANRKARTVKPDSDSSSNSNKKWMVPYKYYDLKGPNPESNPNVDSSSWVLCTEPQLENILLKNIEIIYNDTVSKLVALGHTEDLAVKGVLHNGHCYGANDLATNVLHNSLACLKKGILVDDEFSPAFPNLKKLQEYALMNLVSLLQEVRPDLSRGDAMWCLLMSNFHVLKAGAIPIPVGNMCPPPPLLTELENAGWRFAKEGGSGFPLNGFFSGTEMTIRLQRDIEFPKRLDLTPAMKSLLKRNVAMFADGYRANSKQLQSQPSEFPGFSTVSKLDSSSVSGTAVLGEQQPSVSRKRNDQEDLNTVLSKFLDLNIDETVEFVAEDEKEEVIVTLVNQIKDLEKQVKERRDWAHEKAIQAAKKLSGDLIELKKFKMEREEKQKLKKETEAAEELDDPTLLRLSEMENALRKTSGQMDQATAAVKKLEAEKAEIKAELEASKLSASESVTSCLQVAKREKKCLKKLLAWEKQKAKIQQDISDEKLKILEIQEELARTKQCAKETEVTRKEELKAKEEAFGLIAEERRSKEAAEANKKRNLKALRLKIEIDFQRRKDDLLRLEQEILHLKAPAQSTTFPTSESEDAEPQRETLARLLQELDNVKDFSGKEVDGNRECIICGKDEVSVIFLPCAHQVMCSSCGKEYGKKGKAVCPCCRVPIEQRIPIFGASS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1534 691 Pfam Family of unknown function (DUF6592) 86 194 IPR046527 -
Aed11g1534 691 Coils Coil 393 418 - -
Aed11g1534 691 ProSiteProfiles Zinc finger RING-type profile. 637 677 IPR001841 -
Aed11g1534 691 MobiDBLite consensus disorder prediction 22 43 - -
Aed11g1534 691 SUPERFAMILY RING/U-box 621 684 - -
Aed11g1534 691 Coils Coil 347 367 - -
Aed11g1534 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 688 IPR013083 -
Aed11g1534 691 Coils Coil 494 514 - -
Aed11g1534 691 Coils Coil 424 465 - -
Aed11g1534 691 Pfam Zinc finger, C3HC4 type (RING finger) 634 682 - -
Aed11g1534 691 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 690 - -
Aed11g1534 691 PANTHER OS05G0141500 PROTEIN 14 690 IPR046934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1534 Aed-Chr11 19582262 19585794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1534 637 687 C3H Transcription Factor Family AT1G73950 41.176 1.93e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1534 - - gmx:100789166 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1534 11 19582262 19585794 Aed6g0659 6 5646202 5652050 PCT