Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1533 ATGCCAGTTCCACTTGCCCCTTACCCTCCACCAGTTCCATATACGCCTCCACCAAATGGTATCTTTTCATTCTTTGTTCATTCATCATGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTACTGGTGTACATCCGTGGAGCCACAAGTGTTCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAACCAGGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTCAGGTACCAATATGGAGCAAGATCCGTTAAATGTGCAGTTTGCAGTTTTGTAACATCAGTTGGGGTCAGTACAATCTCTTGTTTATGTACTATGAAGATTTCTGTTAACATGAGTCCCAACTTGATAGTGAAAGGATCTTTAATTGCAAATGTTTGGTCAAAGAGAAGTTAA 420 0.4214 MPVPLAPYPPPVPYTPPPNGIFSFFVHSSCTEMAQLVCGGCHTLLVYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTSVGVSTISCLCTMKISVNMSPNLIVKGSLIANVWSKRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1533 139 PANTHER PROTEIN LOL1 27 108 - -
Aed11g1533 139 Pfam LSD1 zinc finger 76 100 IPR005735 -
Aed11g1533 139 Pfam LSD1 zinc finger 38 62 IPR005735 -
Aed11g1533 139 PANTHER PROTEIN LSD1 27 108 IPR040319 -
Aed11g1533 139 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 35 64 IPR005735 -
Aed11g1533 139 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 73 102 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aed11g1533 zf-LSD1 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1533 - - gmx:100788563 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1533 11 19578528 19579747 Aed6g0662 6 5669521 5672505 PCT