Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1531 ATGGATTCACGTGAACAACCACAGCCACAACAGCAACCACAAGCGCAACCGCCAAGCATGATGGTGGGTCCACCCACCGTGTACCCTTCGATGCTTGCCCCTGCCACCGCCCGATTCCCATTCAGCAACAATAACAACAACAACAACCCTCCTCCTCCCCCTGAGCCTCTCAACAACGACACTAACGCGAACACGAACACGTGCGAGGCGTTGAAGCCGTGCGCCTCGGAGGGCTCGAAGAAGAAGCGGGGCCGGCCCAGAAAATACTCGCCCGATGGCAACATTGCATTGGGCCTGGGCCCAACTCCCGCCCCCGCTTCTTCCGGCGACCCTCCCGCCAAAAAGCACCGCGGTCGCCCCCCTGGCTCCGGAAAGAAGCAGATGGATGCTCTAGGAATTCCCGGAACTGGTTTTACTCCCCATGTTATCACAGCCGAAGCTGGCGAGGATATTGCTGCAAAACTTATAGCCTTTTGTGAGCAAGGAGCTCGAACAGTTTGCACTCTTTCTGCTAGTGGTGCAATCCGCAATGTTACCATTCGAGCGCCGGACACGCTGTCGGGTACTGTGGCCTATGAGGGTCAATTTGAGATTATATCCCTTAAAGCTGCTACGCCAGTATCTGAAAATAATAGCAGTCATAACAGAATGGCCCCCTTGAGTGTGAGTTTAGCAGGTCCTGATGGACAAGTATTGGGTGGTGAAGTTGTTGGAGCGCTTACTGCAGCAGCGGCAGTGCAGATAGTTCTGGGTAGCTTTATTGCTGATGGAAAAAAGACCAGCTCAAGTAACCTGAAATCTGGACGCTCTTCCGTGCCATCATCCCAGATGTTAGCTTTTGGTGCTTCTCCAACTCCAACCACTCCTACCTCTCAAGGGACTGATTCATCTGAAGATAATGAGAATAGTCAATTTCGTAAGGGGCCAGGAGGAGGAGGAGGAGGTGGTCCAGGAGGACTCTACAGTAATGCTGCTAGTCAGTCCATCATTCATAACATGCCTGTGTACCATCATCAACTATGGGCTGGCCAAACTCAGCAGTGA 1044 0.5287 MDSREQPQPQQQPQAQPPSMMVGPPTVYPSMLAPATARFPFSNNNNNNNPPPPPEPLNNDTNANTNTCEALKPCASEGSKKKRGRPRKYSPDGNIALGLGPTPAPASSGDPPAKKHRGRPPGSGKKQMDALGIPGTGFTPHVITAEAGEDIAAKLIAFCEQGARTVCTLSASGAIRNVTIRAPDTLSGTVAYEGQFEIISLKAATPVSENNSSHNRMAPLSVSLAGPDGQVLGGEVVGALTAAAAVQIVLGSFIADGKKTSSSNLKSGRSSVPSSQMLAFGASPTPTTPTSQGTDSSEDNENSQFRKGPGGGGGGGPGGLYSNAASQSIIHNMPVYHHQLWAGQTQQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1531 347 Gene3D - 140 267 - -
Aed11g1531 347 MobiDBLite consensus disorder prediction 259 324 - -
Aed11g1531 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 304 IPR039605 GO:0003680
Aed11g1531 347 CDD DUF296 139 253 IPR005175 -
Aed11g1531 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 253 IPR005175 -
Aed11g1531 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 43 304 - -
Aed11g1531 347 MobiDBLite consensus disorder prediction 259 299 - -
Aed11g1531 347 MobiDBLite consensus disorder prediction 1 134 - -
Aed11g1531 347 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Aed11g1531 347 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Aed11g1531 347 ProSiteProfiles PPC domain profile profile. 135 275 IPR005175 -
Aed11g1531 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1531 Aed-Chr11 19560977 19564858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1531 80 347 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.581 2.56e-62 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1531 - - gmx:100788026 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1531 11 19560977 19564858 Aed6g0665 6 5695033 5702149 PCT