Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1528 ATGGCTGCAGAGATTAATATTGGGCTAGTCTCCTCCTCCTCCATCACCCAGATCCAAAAACTATCACAACCAAAACAACAACAACAACAACAACCTCAAAACCCTAACACTTCCTCTTCTACCTGGATGTGGAACCCTAGGGAGCAGCAGGTAGAAGATGATGATGAGTCTTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCTAGGTCCTACACCTGCACCTTCTGCAGAAGAGAGTTTCGCTCCGCCCAAGCCCTTGGCGGCCACATGAACGTCCACCGCCGCGACCGCGCCCGTCTCCACCAAGCTCCACCCTCCAACCCCACCACTACTACTCCTTCACCCTTCATCAATATCCCTCCTCAAGAGCTTGTTGCAAATGCTGGCTTGTGCCTCCTCTACCACTTGCCCACAAGCCCTAGTACTGCACCACCCACTCCCATTCCCTCTCCTTCCACTCTTCTCTCTATCTCTTCCTATCCTCCAAACAACTTTCTTATGCAAACTTCCTTTAATTTCCCCGGTGCACCCACATCAACTGGGATCAATAATAATGTTTCTTCTTTGTACTATAACTCTAGCAAAGTCGAACCATCCGCAACCTCCTCCTCTATTGATAATGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACCAACCTCATAA 711 0.5035 MAAEINIGLVSSSSITQIQKLSQPKQQQQQQPQNPNTSSSTWMWNPREQQVEDDDESWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPPSNPTTTTPSPFINIPPQELVANAGLCLLYHLPTSPSTAPPTPIPSPSTLLSISSYPPNNFLMQTSFNFPGAPTSTGINNNVSSLYYNSSKVEPSATSSSIDNGHLEELDLELRLGHKPTPTS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1528 236 SUPERFAMILY beta-beta-alpha zinc fingers 77 107 IPR036236 -
Aed11g1528 236 MobiDBLite consensus disorder prediction 17 43 - -
Aed11g1528 236 PANTHER OS07G0101800 PROTEIN 43 229 - -
Aed11g1528 236 Pfam C2H2-type zinc finger 80 104 - -
Aed11g1528 236 Gene3D Classic Zinc Finger 71 121 - -
Aed11g1528 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Aed11g1528 236 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 43 229 - -
Aed11g1528 236 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Aed11g1528 236 SMART c2h2final6 80 102 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1528 Aed-Chr11 19541825 19542535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1528 39 232 C2H2 Transcription Factor Family AT4G17810 44.000 9.69e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed11g1528 zf-C2H2_6 4.9e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1528 - - gmx:100818142 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1528 11 19541825 19542535 Aed11g1528 11 19541825 19542535 ECH
Aed11g1528 11 19541825 19542535 Aed6g0668 6 5774948 5775851 PCT