LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed11g1520	ATGCCACAACCCTTGTTTCTGTTTTTACTTCTATGTTTATTGTGCTCAAGTGGTTTGTCCCTCGAGAGAGACACTCAAATTCTACTTCGGGTCAAGAACAACCAGCTTCAAGACAAAAACAAGAGTCTTAAAGACTGGGTGCCCAACACCGACCAGAACCCCTGCAACTGGACCGGCATTACCTGCGACGCACAAAACCACTCACTTGTCTCCATTGACCTCTCCGAAATTGGAATCTACGGCGAGTTCCCCTTCGGCTTTTGTCGCATTCACACCCTCCAAAGCCTTTCTGTGGCTTCCAATTTTCTCACCAACACTATCTCCTCCAACTCTCTGCTTCCCTGTTCCCATCTTCGTCTCTTGAACCTCTCCGACAATTATTTCGTCGGAGTTCTGCCGGAATTCCCGCCGGAGTTCACTGAACTGAGACAACTAGACCTCTCAAAGAACAACTTCACCGGCGAAATCCCGGCGAGTTTTGGACAGTTTCGACATCTGAGAGCGCTTGTTTTATCTGGAAACCTTCTCAGCGGAACGATCCCTCCCTTCTTAGGCAACCTTAGTGAGTTAACTCGTTTTGAACTAGCTTACAACCCCTTCAAACCAGGACCATTACCTTCCCAATTAGGAAACCTCTCTAATCTCGAAACACTGTTCCTCGCCGATGTAAACCTCGTAGGGGAAATTCCACACTCCATCGGGAACCTCACCTCGCTCAAGAACTTTGATTTGTCTCAAAACTCCTTGTCAGGTAACATCCCAAACAGCATTTCGGGTCTGAAAAACGTTGAACAAATTGAACTATTTCAAAACCAGCTCTCCGGCGAATTACCCAAGGGGTTAGGAAACCTCGGCAGTTTAATTCGCTTAGACCTCTCTCAGAACTCTCTAACGGGAAGACTACCAGACACAGTTGCTTCTCTGCATCTCTATTCTCTCAACCTGAACGACAACTTTCTCAGGGGAGAAATTCCTGAAAGTCTAGCTTTAAACCCAAATCTGAAGCAACTGAAACTCTTCAACAACAGCTTCACCGGGAAACTCCCACCAGATCTGGGCCAAAACTGTAGCATAGAAGAATTCGATGTCTCGACTAATGACTTCGTGGGAGAGTTGCCAAAGTACCTCTGCCAGGGGAACAAACTCCAGTTGCTCATCACGTTCGCGAATCGCTTCTCTGGAACGCTCCCTGACCAATACGCCGAGTGTCGTTCACTTCAGTATGTCAGAATCCAGAACAACCAATTCTCTGGGCCGGTGCCGCCATCGTTTTGGGCCCTTAGTGGGCTCCATTTTCTGGAAATGTCCAACAACAGGTTCCAAGGCTCTGTCTCGGGTTCCATCTCCAGGGGACTCTCCAAACTCATTTTGTCCGGTAACAGCTTTTCTGGCCAATTCCCAATGGAAATATGTGAACTTCATAACCTCTTGGAGATTGACGTCAGCAAGAACCGCTTCATCGGTCAAGTTCCCACGTGCGTAACTGGGTTGGCTAAGTTACAGAAACTTAGACTGCAAGAGAACATGTTCACAGGCGAAATTCCAAGTAACGTGAGCCTGTGGACAGACATGACAGAGTTGAACTTGTCGTTTAACCGGTTCACCGGTTCAATCCCGCCGAAACTTGGTAATTTACCGGATTTAACGTTCCTCGATCTCGCCGTTAATTCTTTAACGGGGGAGATTCCGGTGGGGTTGACGAACCTAAGACTCAACCAGTTCAACGTCTCCGGTAACAAGTTGCACGGGGTGGTTCCTTTAGGATTCAACCGCCAAGTGTACTTATCGGGTCTAATGGGAAACCCTGGTCTCTGTAGCCCCGTTATGAAAACCCTGCCTTCTTGTTCCAAACGCAGGCCGTTTTCTCTGCTTGCTATTGCCGTTTTAGTTGCCTGCGTTTCGCTCCTGGTGGGGTCTACGTTGTGGTTCCTGAAGAGCAAGACGCGTGGTTTTGGTAGCAAATCCAAGAGCTCATCCTATATGTCAACCGCGTTCCAGAGAGTGGGGTTCAATGAAGAAGATATTTTTCCGAACTTAACAAGTAACAACGTGATTGGCACAGGGAGTTCTGGTCGGGTTTACAAGGTGAGGCTCAAAACGGGGCAGACAGTGGCGGTGAAGAAGTTGTTTGGTGGCGCGCAAAAGCCTGACACGGAAATGGTGTTCAGGGCGGAGATTGAGACTTTGGGAAGGATTCGGCATGCCAATATTGTGAAACTGTTGTTTAGTTGCAGTGGGGATGAGTTTAGGATATTGGTGTATGAGTACATGGAGAATGGGAGTTTAGGGGATGTGCTGCATGGTGAGGACAAGTGTGGGGAGTTGATGGATTGGTCTAAGAGGTTTGCAATTGCTGTGGGTGCGGCTCAGGGGTTAGCTTATTTGCACCATGATTCTGTTCCTGCTATTGTTCACAGAGACGTCAAGAGTAATAACATTTTGCTGGACCATGAGTTTGTGCCAAGAGTAGCAGATTTTGGACTCGCTAAGACATTGCAGCGTGAGGCCACCCAGGGTGCTATGTCCAGGGTTGCTGGATCATATGGTTACATTGCTCCAGGTAAAGATTATATTATGAGCCAGATTGTGGACCCGAGATTGAACCCAGCCACTTGTGATTATGAAGAGATTAAGAAGGTTTTAAATGTGGCCCTACTCTGCACCTCAGCGTTTCCCATTAATAGACCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGTCATGA	2736	0.477	MPQPLFLFLLLCLLCSSGLSLERDTQILLRVKNNQLQDKNKSLKDWVPNTDQNPCNWTGITCDAQNHSLVSIDLSEIGIYGEFPFGFCRIHTLQSLSVASNFLTNTISSNSLLPCSHLRLLNLSDNYFVGVLPEFPPEFTELRQLDLSKNNFTGEIPASFGQFRHLRALVLSGNLLSGTIPPFLGNLSELTRFELAYNPFKPGPLPSQLGNLSNLETLFLADVNLVGEIPHSIGNLTSLKNFDLSQNSLSGNIPNSISGLKNVEQIELFQNQLSGELPKGLGNLGSLIRLDLSQNSLTGRLPDTVASLHLYSLNLNDNFLRGEIPESLALNPNLKQLKLFNNSFTGKLPPDLGQNCSIEEFDVSTNDFVGELPKYLCQGNKLQLLITFANRFSGTLPDQYAECRSLQYVRIQNNQFSGPVPPSFWALSGLHFLEMSNNRFQGSVSGSISRGLSKLILSGNSFSGQFPMEICELHNLLEIDVSKNRFIGQVPTCVTGLAKLQKLRLQENMFTGEIPSNVSLWTDMTELNLSFNRFTGSIPPKLGNLPDLTFLDLAVNSLTGEIPVGLTNLRLNQFNVSGNKLHGVVPLGFNRQVYLSGLMGNPGLCSPVMKTLPSCSKRRPFSLLAIAVLVACVSLLVGSTLWFLKSKTRGFGSKSKSSSYMSTAFQRVGFNEEDIFPNLTSNNVIGTGSSGRVYKVRLKTGQTVAVKKLFGGAQKPDTEMVFRAEIETLGRIRHANIVKLLFSCSGDEFRILVYEYMENGSLGDVLHGEDKCGELMDWSKRFAIAVGAAQGLAYLHHDSVPAIVHRDVKSNNILLDHEFVPRVADFGLAKTLQREATQGAMSRVAGSYGYIAPGKDYIMSQIVDPRLNPATCDYEEIKKVLNVALLCTSAFPINRPSMRRVVELLKDHKLS	911

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed11g1520	911	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2	14	857	-	-
	Aed11g1520	911	ProSiteProfiles	Protein kinase domain profile.	679	911	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed11g1520	911	SUPERFAMILY	Protein kinase-like (PK-like)	663	905	IPR011009	-
	Aed11g1520	911	Gene3D	Transferase(Phosphotransferase) domain 1	670	909	-	-
	Aed11g1520	911	Gene3D	Ribonuclease Inhibitor	296	618	IPR032675	-
	Aed11g1520	911	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	857	909	-	-
	Aed11g1520	911	Gene3D	Ribonuclease Inhibitor	202	295	IPR032675	-
	Aed11g1520	911	SUPERFAMILY	L domain-like	309	587	-	-
	Aed11g1520	911	Pfam	Leucine rich repeat N-terminal domain	22	63	IPR013210	-
	Aed11g1520	911	Pfam	Leucine rich repeat	213	273	IPR001611	GO:0005515
	Aed11g1520	911	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2	857	909	-	-
	Aed11g1520	911	Pfam	Leucine Rich Repeat	142	161	IPR001611	GO:0005515
	Aed11g1520	911	Pfam	Protein kinase domain	682	853	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed11g1520	911	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	14	857	-	-
	Aed11g1520	911	ProSitePatterns	Protein kinases ATP-binding region signature.	685	708	IPR017441	GO:0005524
	Aed11g1520	911	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	803	815	IPR008271	GO:0004672\|GO:0006468
	Aed11g1520	911	Gene3D	Ribonuclease Inhibitor	19	201	IPR032675	-
	Aed11g1520	911	SUPERFAMILY	RNI-like	66	377	-	-
	Aed11g1520	911	SMART	serkin_6	679	911	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed11g1520	Aed-Chr11	19462807	19467243	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed11g1520	24	857	Receptor kinase-like Gene Family	AT5G65710	55.595	0.0	902

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Aed11g1520		Pkinase	2.9e-35	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed11g1520	-		-	gmx:100813889	1523.84