Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1511 ATGGGTCTTCATCAGGATGCCAATAGCTCAGGAGGCCTTCACCTCGTTCTAGGGCTTTCTTTGACTGCAGCTACCGTAAAGGAAACCAGTACTCCATCCACCAAGCCTGATCATCTTTGCGTTATTAAGCCAACGCCAACCAAACCTTATCCCTCGAATGAACCGTCTTTAACGTTGGGTCTGTCCGGTGAGAGTTACCAGCACTCGACCAAGCAAGTGCCCAGAAATAACAACGTTAACAGGGTCTATTATGAGGACCCTCTTGACTTGTCTAGGCAGACATCACCTCACAGCGTGGTTTCGTCTTTCTCAACCGGGAGGGTTGTCAAGAGGGAGAGGGATCTTAGCTGTGAAGACATAGAGGTTGAGGCAGAAGAGAGGGTTTCTTCACGACTGAGCGACGAAGACGAAGACGGAAGCAATGCTAGAAAGAAGCTCAGACTCACCAAACAACAATCTGCACTGCTAGAGGAGAGCTTCAAACAACACAGCACTCTCAACCCCAAACAGAAGCAAGCTTTAGCCAGACAGTTAAATCTACGACCTCGACAAGTTGAAGTATGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACATTGACGGAGGAAAACAGGAGGTTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAAGTAGCTCAACCCTTGTACATGCCTATGCCCGCTGCCACACTCACCATGTGCCCTTCTTGCGAGAGGTTGGGTGCCGGCGTTGGCGATAACAATGCTTCCAATAATAAAAGCCCCTTCTCCATGCCTCCCAAGCCTCACTTCTATAACCCCTTCGCCAATCCTTCTGCAGCATGTTAG 876 0.4909 MGLHQDANSSGGLHLVLGLSLTAATVKETSTPSTKPDHLCVIKPTPTKPYPSNEPSLTLGLSGESYQHSTKQVPRNNNVNRVYYEDPLDLSRQTSPHSVVSSFSTGRVVKRERDLSCEDIEVEAEERVSSRLSDEDEDGSNARKKLRLTKQQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLKKELQELKALKVAQPLYMPMPAATLTMCPSCERLGAGVGDNNASNNKSPFSMPPKPHFYNPFANPSAAC 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1511 291 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Aed11g1511 291 Coils Coil 205 235 - -
Aed11g1511 291 Pfam Homeobox associated leucine zipper 199 232 IPR003106 GO:0006355|GO:0043565
Aed11g1511 291 SMART HOX_1 141 203 IPR001356 GO:0003677
Aed11g1511 291 Gene3D - 136 204 - -
Aed11g1511 291 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Aed11g1511 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 8 291 - -
Aed11g1511 291 SUPERFAMILY Homeodomain-like 133 200 IPR009057 -
Aed11g1511 291 CDD homeodomain 143 200 IPR001356 GO:0003677
Aed11g1511 291 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Aed11g1511 291 PANTHER - 8 291 - -
Aed11g1511 291 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1511 Aed-Chr11 19415509 19417857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1511 1 291 Homeobox Transcription Factor Family AT4G37790 59.272 2.88e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed11g1511 Homeodomain 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1511 K09338 - gmx:100784129 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1511 11 19415509 19417857 Aed6g0683 6 5946925 5948480 PCT