Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1487 ATGGATACGACGTTGTTTAGGGTAGTGAGTTTCCAACACGATCAAGATCAGTCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGGTCCTCCAGGCAACAACAAAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCATCGTCTTCTTCCAAGCACTACTATCCCTATCAGCCCCACCCACCCTCCACTACCACCACCTCTCCCACCACTCGCGACGCTGCATCATCCCTTCCTTTTCCCTTTCCTTTCGAATTGTCCGGCAAGTGGGCCCACGACATCCTCCTTGAAACCGCACGTGCAGTGGCCGACAAGAACACGACGCGGCTCCAACAACTGATGTGGATGCTAAACGAGCTAAGCTCCCCCTACGGCGACACGGACCAGAAGCTAGCCTCCTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCTGGGGACCGAACCTACCGAACCTTAGCTTCGGCCTCCGACAAAACATGCTCCTTCGACTCCACCCGCAAGACCGTCCTCAAGTTCCAAGAGGTCAGCCCCTGGACAACCTTCGGCCACGTGGCGTCCAATGGCGCCATCCTCGAAGCCTTGGAAGGCGAGCCCAAACTACACATACTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCCTCGCCACTCGAAACGACGACACTCCGCACCTCCGTTTGACCTCTGTAGTCACCGCTGGCGCCACCGCGCACAAACTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCATTCAAATTCAACGTCGTTCACCACGTAGGTCAACTCTCTGATTTGGATTTTAATCTGTTGGATATCAAAGAGGACGAGGCGCTGGCGATTAACTGCGTCAACACCTTGCATTCGATCTCCGCCGTGGGGAACCACCGAGACGCGGTGATATCCTCGTTTAGGAGGTTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCAGACTTGGACGTGGGATTGGAAGGGTTTGAGTTTGTGAAAGGCTTCGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCGTTGGAGGAGAGTTTTCCGAGGACGAGCAACGAGAGGTTGATGCTGGAGAGGGCGGCGGGGAGGGCGGTAGTGGACCTGGTGGCGTGTACGGAGGCGGAGTCGGTGGAGAGGAGGGAGAAGGCGGCGAGGTGGGCAAGGAGGATGCATGGAGCGGGGATGAATACGGTGGCCTTGAGCGAAGAGGTGTGTGATGATGTGAGGGCGTTGTTGAGAAGGTACAGAGAGGGTTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTAAAGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTCACGTAG 1434 0.5565 MDTTLFRVVSFQHDQDQSLNNSTTSSSSRSSRQQQNYPYPQEDEECFNFFMDEEDLSSSSSKHYYPYQPHPPSTTTTSPTTRDAASSLPFPFPFELSGKWAHDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRITQAGDRTYRTLASASDKTCSFDSTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHILDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTAGATAHKLMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFNLLDIKEDEALAINCVNTLHSISAVGNHRDAVISSFRRLQPRIVTVVEEEADLDVGLEGFEFVKGFEECLRWFRVYFEALEESFPRTSNERLMLERAAGRAVVDLVACTEAESVERREKAARWARRMHGAGMNTVALSEEVCDDVRALLRRYREGWAMTQCSDAGIFLKWKDQPVVWASAWRAFT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1487 477 MobiDBLite consensus disorder prediction 60 84 - -
Aed11g1487 477 Pfam GRAS domain family 103 474 IPR005202 -
Aed11g1487 477 MobiDBLite consensus disorder prediction 14 38 - -
Aed11g1487 477 ProSiteProfiles GRAS family profile. 92 474 IPR005202 -
Aed11g1487 477 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 474 IPR005202 -
Aed11g1487 477 PANTHER PROTEIN SHORT-ROOT 1 474 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1487 Aed-Chr11 19255893 19257326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1487 4 474 GRAS Transcription Factor Family AT4G37650 61.553 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed11g1487 GRAS 7.6e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1487 - - gmx:100820459 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1487 11 19255893 19257326 Aed6g0714 6 6278389 6279906 PCT