Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1486 ATGGGGAAGAAGCAGCACAGCAAAGACAGAATGTTCATCACCAAAACGGAGTGGGCAACGGAATGGGGAGGCGCTAAATCCAAAGAAAATCGCACTCCCTTCAAACGTCTTCCCTTCTATTGCTGCTCGCTTACATTTACACCGTTTCAAGAACCGGTCTGCACAGCTGATGGCAGTGTTTTCGATAATATGAATATAACTCCCTATATCGTAAAATATGGCAAACATCCCGTGACTGGAGCTCCTCTGAAGCATCAGGATCTCATTCCTCTAACTTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGTTAAACAAAGTTTTCACTGAGTTTACACATATTGTGGCAGTGAAGACCACTGGAAACGTGTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTCCTCACCGATGAGCCATTCACTAAGGATGACCTTATAACCATTCAGAATCCTAATGCACTTGACCTCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAGAACTCCAGAAAATGAGCTCAGATCCAACCTATAACATAAACATGTCGGGTGATATAAAGCAAATGCTTAAGGAGCTTGGAACGGATAAAGGAAAGGAAACTGCATTGCACGGGGGAGGCGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACGTGTTGAAGAAGATCCAAATGAAGGGGCCAAAGCTCCTCAGGCATTTAGTATTGTAGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCGGCAGGTGATAAAACTGCAGCTAGAATAGCTATGCATATGGCTGGTGACAGGGCGCCAGTGAATGCAAAGATGGTAAAAAGCCGTTTCACAACCGGTGCTGCTTCTCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAGTATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATTGAGCTGCATTGTGATATAACACCCAGGGCATGTGAGAACTTCATCACTCTTTGTGAACGTGGGTATTATAATGGAGTTGCTTTTCATAGAAACATTAGGAATTTTATGATACAGGGTGGTGATCCTACTGGTACTGGTCGAGGAGGCGAATCTATATGGGGAAAGCCTTTTAATGATGAACTTAACTCCAAATTAGTTCACTCTGAAAGGGGTGTGGTAAGCATGGCAAACAGTGGTCCACACACTAATGGCTCCCAGTTCTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTCGGAGGAGTTGTCGGTGGCTTGACTACACTAGCGGCGATGGAAAAGGTTCCTGTTGATGATAATGACCGACCTACGGATGAAATCAAGATAACAAGTGTGACGATTTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAACAGAAGAATGCAGAGGATGAAGATAATGGTAAGGTAGGATCATGGTATAGCAATCCTGGCGCTGCAACGTCTGAATCTGGAGGTACGGGGGTTGGTGGTGGCGTCGGCAAGTACTTGAAAGCTAGGAATGCTCAAGCAGCTAAATCTGCTACTGTTGACAACACCGGTACAGACGTTGTAGTAAAGAAAAGAAAAGTGGGAGTGGTCAGCAGTGAATTTAAAGATTTTTCTGCATGGTAA 1785 0.4308 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCSLTFTPFQEPVCTADGSVFDNMNITPYIVKYGKHPVTGAPLKHQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDLKVLLDFDHVKNSLKVDDEELQKMSSDPTYNINMSGDIKQMLKELGTDKGKETALHGGGGGKAQKERAAALAAILAARSRVEEDPNEGAKAPQAFSIVDAASASVHGRSAAAAKASAGDKTAARIAMHMAGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFNDELNSKLVHSERGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDNDRPTDEIKITSVTIFVNPYTEPDEGEEQDNAKQKNAEDEDNGKVGSWYSNPGAATSESGGTGVGGGVGKYLKARNAQAAKSATVDNTGTDVVVKKRKVGVVSSEFKDFSAW 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1486 594 SUPERFAMILY RING/U-box 37 104 - -
Aed11g1486 594 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 592 - -
Aed11g1486 594 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Aed11g1486 594 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Aed11g1486 594 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Aed11g1486 594 CDD cyclophilin_RING 346 504 - -
Aed11g1486 594 Gene3D - 325 510 IPR029000 -
Aed11g1486 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Aed11g1486 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 457 472 IPR002130 GO:0000413|GO:0003755
Aed11g1486 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 360 375 IPR002130 GO:0000413|GO:0003755
Aed11g1486 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 429 444 IPR002130 GO:0000413|GO:0003755
Aed11g1486 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 386 398 IPR002130 GO:0000413|GO:0003755
Aed11g1486 594 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 444 456 IPR002130 GO:0000413|GO:0003755
Aed11g1486 594 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 592 IPR044666 -
Aed11g1486 594 MobiDBLite consensus disorder prediction 508 524 - -
Aed11g1486 594 SUPERFAMILY Cyclophilin-like 346 504 IPR029000 -
Aed11g1486 594 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 350 497 IPR002130 GO:0000413|GO:0003755
Aed11g1486 594 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 346 496 IPR002130 GO:0000413|GO:0003755
Aed11g1486 594 MobiDBLite consensus disorder prediction 501 545 - -
Aed11g1486 594 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Aed11g1486 594 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 381 398 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1486 Aed-Chr11 19246969 19252129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed11g1486 1 594 U-box Gene Family AT5G67530 75.084 0.0 908
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1486 K10598 - gmx:100819923 1086.63